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Detailed information on CNT30595887


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003370, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691965Oryza meridionalisOryza sativa10083.7699.3428forward
CNT30603841Oryza meridionalisOryza punctata92.5280.1694.7396forward

Expression of CNT30595887

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAPPPLLRAEMVTDQQQAGDTCPGVGRSRRGLCRQPCTQSPRCS*

>peptide 2 (62 aa)
MTNHGATSAAPCRDGHGSAASRRHMPRRGQIKARIVSAAVHSVASVLLKALHSSHILVRNPF*

Sequence

>CNT30595887
CCCAAAAGCTGAGAGAGGGCACGCATCCAAAGTTCCAAACTAGTCTGCAGCTGCTGTTGGTGTGCATATCCAGTGAGTGAAGTGCAGGAAGATGACCAAC
CATGGCGCCACCTCCGCTGCTCCGTGCAGAGATGGTCACGGATCAGCAGCAAGCAGGAGACACATGCCCAGGCGTGGGCAGATCAAGGCGAGGATTGTGT
CGGCAGCCGTGCACTCAGTCGCCTCGGTGCTCTTGAAAGCGCTCCACAGCAGCCACATCCTGGTCAGAAACCCCTTCTGATGGAGCTATCAGCTAGTATA
CCGAAATTAGGCGAGTTACCTGTTCGGCTGTACCTGGAATCAGCTGGTTTTCAAGTGTAAGCATGGTTCAGAAAGTGATAGCCTAGATGGATGTACTCAT
GTACATTTCTTTCTCCCTCCCTCGTTTC