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Detailed information on CNT30595883


BLAST search results

BLAST vs Swiss-Prot:
sp|Q60E70|COBL3_ORYSJ, E-value = 3e-56

BLAST vs NONCODE:
NONORUT005134, E-value = 9e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678235Oryza meridionalisSetaria viridis29.5655.385.63167forward
CNT30522059Oryza meridionalisSetaria italica29.5634.3685.63167forward
CNT30189491Oryza meridionalisSecale cereale19.2939.3582.57109forward
CNT30224680Oryza meridionalisHordeum vulgare47.6139.8583.27269forward
CNT30553120Oryza meridionalisOryza glaberrima78.9472.5299.33446forward
CNT30448340Oryza meridionalisSaccharum spontaneum45.8447.2686.1259forward
CNT30149Oryza meridionalisZea mays38.944083.64220forward
CNT30105638Oryza meridionalisOryza longistaminata78.9448.2798.21446forward
CNT30575480Oryza meridionalisOryza barthii89.0392.898.41503forward

Expression of CNT30595883

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTQLSPLKYTRWGKAHPLSKVKAIESFRRSSSDCAFPSGPACMSKSL*

>peptide 2 (48 aa)
LSFKLGLLGSAADQQTKSYGTALFPQAKTWFPLKKIEILAQAKNIERV*

Sequence

>CNT30595883
CTGAGCTTCAAGCTGGGTTTGCTTGGAAGTGCAGCTGACCAACAAACCAAAAGCTACGGAACAGCACTCTTTCCACAAGCCAAAACATGGTTCCCTTTGA
AGAAGATAGAGATCTTGGCACAAGCCAAAAACATTGAGCGTGTTTGAGGACCTGGAACCAAGATCATCTATGAAGGAAAGTAGCCAACACAATCCAAAAT
GCCAAGAGCGGGAGCATCAATGGTTGTTTTGTTAGAGGGCTTGCATTAGGCAACCATGGATATGCATCTGGAGGTGGCATGACACAATTGTCACCATTGA
AGTACACACGGTGGGGGAAGGCCCATCCCTTGTCAAAGGTGAAAGCCATAGAATCCTTCCGCAGAAGTAGTTCTGACTGCGCATTTCCAAGTGGGCCAGC
TTGCATGAGCAAATCGTTGTAGAACTTTACTCCCCAGAACATTGCAGTATCATCTAAAATAGAAGGAACAAATTCTGTCAGAGAGGTTGAAGGAGGGAGG
GGCATGTCACAGGTGCATTCTATTACTCTGAAAGTTAAGTAAAACAATTTACTTACTTATTCTGC