« Back to Oryza meridionalis search


Detailed information on CNT30595873


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224095Oryza meridionalisHordeum vulgare19.1134.8288.3786forward
CNT30444291Oryza meridionalisSaccharum spontaneum23.1110.7191.35104forward
CNT30342600Oryza meridionalisEragrostis tef24.8931.4683.93112forward
CNT30369796Oryza meridionalisOryza glumipatula60.4458.7597.06272forward
CNT30575883Oryza meridionalisOryza barthii62.4416.0298.93281forward
CNT30579095Oryza meridionalisEchinochloa crusgalli3826.0784.8171forward
CNT30558870Oryza meridionalisPanicum hallii27.5623.7585.48124forward

Expression of CNT30595873

Peptides detected in this lncRNA

>peptide 1 (43 aa)
VKQSCQESIDRCTRRQNQRPLSSLGLILVIFRDSWASIEIISK*

>peptide 2 (39 aa)
MTVSLGDDETEASFLPLVQDVHLPGLLVSEGVEVVVHIH*

Sequence

>CNT30595873
GTTAAACAGAGTTGTCAAGAGTCGATCGATCGATGTACACGGAGACAAAATCAAAGACCTCTCTCATCACTTGGATTAATACTAGTAATATTTAGAGACT
CTTGGGCAAGCATAGAAATAATTAGCAAATGATGGTGATGCAGGAGGTGTAGAGGCTAGGCAGCAAGGGAGGGGTGGTGGTGGTCAGAGTTGGGGATGGT
CTCCTTGTGGAGATGACCGTCTCCCTTGGGGACGATGAGACCGAAGCCTCCTTCCTTCCTCTTGTACAGGACGTTCATCTCCCCGGTCTTCTCGTCTCTG
AAGGCGTAGAAGTTGTGGTCCACATTCACTAGCTGCTCCATCGCCTCCTCCACCGACAGCGGCGGCATCTCGAACACCTTGGTGCGCACCACCTGCATTT
CACAGTTGCATTTCCGATCAGTTGCATTTGGTTCATGAATGATTTATATG