« Back to Oryza meridionalis search


Detailed information on CNT30595862


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH4|PSAA_ORYNI, E-value = 0.0

BLAST vs NONCODE:
NONVVIT000008, E-value = 3e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675574Oryza meridionalisSetaria viridis7.3134.4897.580forward
CNT30730522Oryza meridionalisCorchorus capsularis49.8678.7989.74546forward
CNT30201935Oryza meridionalisPisum sativum77.5349.8287.99849forward
CNT30219784Oryza meridionalisHordeum vulgare42.3799.5795.04464forward
CNT3086956Oryza meridionalisVigna radiata22.288.9186.48244forward
CNT30511784Oryza meridionalisSolanum lycopersicum25.7542.9291.49282forward
CNT30486Oryza meridionalisZea mays10039.696.261095forward
CNT30688863Oryza meridionalisTriticum urartu71.1437.0494.48779forward
CNT30621618Oryza meridionalisCajanus cajan43.84100.4286.88480forward
CNT30369168Oryza meridionalisOryza glumipatula20.0960.2799.09220forward
CNT30430934Oryza meridionalisPapaver somniferum99.6316.790.381091forward
CNT3057361Oryza meridionalisAmborella trichopoda68.414.8985.58749forward
CNT30585620Oryza meridionalisEchinochloa crusgalli10021.3496.351095forward
CNT30333024Oryza meridionalisCynara cardunculus58.7263.186.31643forward

Expression of CNT30595862

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLAKSEKTRRLFGFLGNPRLHHHSIFLALRLAKLPEHWVQCE*

>peptide 2 (42 aa)
MEVHATQPKKDNGELTEMSTKDFSRDLLQITCMTIEIVSISM*

>peptide 3 (39 aa)
MALSCKWAFMSLQNIFQAMTNTPVGPIHMTCDQEKNSNS*

>peptide 4 (30 aa)
MGLYEPPKYLSGHDQYPSWSYTYDLRSGKE*

Sequence

>CNT30595862
AGAGTACATATGATGAGCTACAACAATGGTTGTAGAGCCTAGCATAGCTAGGTTAAGAGATAATTGAGCATGCCATGACGTTGTTAGGATTTCATAGAGA
CCTTTATGGCCCTGTCCTGTAAATGGGCCTTTATGAGCCTCCAAAATATCTTTCAGGCCATGACCAATACCCCAGTTGGTCCTATACATATGACCTGCGA
TCAGGAAAAGAATAGCAATAGCTAAATGATGGTGCGCAATATCGCTCAACCATAGACCGCCGGTTATTGGATCTAGCCCTCCGCGAAAACTAAGAAATTC
TGCGTATTTGGACCAATTCAAGGTGAAAAAAGGGGGGTTGCTCCTTCGGCAAAACTAGGATAAAGTTGAGCCAAAAGGTCGCGATTCAAGATAAATTCAT
GAGGAAGTGGTATCTCCTTAGGATCAACCCCAGCGTCAAGAAATTGGTTAATCGGTAAAGATACATGGATTTGGTGCCCCGCCCAAGAAAGAGACCCAAG
TCCTAATAACCCTGCTAAGTGATGATTCAACATGGATTCTACGTCTTGGAACCAGGCTAATTTGGGAGCGGCTTTGTGATAATGGAACCACCCAGCAAAA
AGCATTAACGATGCAAAAATCAATGCACCGATTGCGGTACAATAGAGTTGTAATTCACTAGTTATTCCGGATGCTCGCCAAATCTGAAAAAACCCGGAGG
TTATTTGGATTCCTCGGAAACCCCCGCCTACATCACCATTCAATATTTCTTGCCCTACGATTGGCCAAACTACCTGAGCACTGGGTCCAATGTGAGTAGG
ATCACTTAGCCATGCTTCATAATTGGAAAAACGGGCACCATGGAAGTACATGCCACTCAACCAAAGAAAGATAATGGAGAGTTGACCGAAATGAGCACTA
AAGACTTTTCGAGAGATCTCCTCCAAATCACCTGTATGACTATCGAAATCGTGAGCATCAGCATGTAGGTTCCAGATCCAAGTGGTAGTATCAGGGCCCT
TAGCTATTGTTCTTGAGAAATGGCCGGGTCTGGCCCATTCCTCAAAAGATGTTTTTACAGGATCCCTATCCACAACAACTTTTACTTCTGGTTCC