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Detailed information on CNT30595853


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552890Oryza meridionalisOryza glaberrima43.1410099.43352forward
CNT30721322Oryza meridionalisTriticum spelta27.8247.4988.99227forward
CNT30100962Oryza meridionalisOryza rufipogon43.559.3699.44355forward
CNT30575932Oryza meridionalisOryza barthii29.1781.7999.58238forward
CNT30116017Oryza meridionalisOryza nivara40.8110099.4333forward

Expression of CNT30595853

Peptides detected in this lncRNA

>peptide 1 (80 aa)
KLHNSDYRASMLQHALPSPELLQPIENCLIRTIGAVSPTLQPTELVQGLCATHELVRVSLAVLEHYGSCSKGSSHFRSKI*

>peptide 2 (49 aa)
MQEFPLQLTPLCFGSGPADIQNDTSSEDRDGHGGRKGVKKLTSLRVEEHE

Sequence

>CNT30595853
AAAACTCCATAATTCGGACTATCGAGCCAGTATGCTCCAGCATGCTTTGCCATCCCCGGAGCTGTTGCAACCGATAGAAAATTGCTTGATCAGAACCATT
GGGGCTGTATCTCCCACGCTGCAGCCTACCGAACTTGTACAGGGCCTTTGCGCCACGCACGAGCTTGTCAGAGTAAGTCTTGCTGTCCTTGAACACTATG
GAAGCTGCAGCAAGGGCAGCAGCCATTTCAGAAGCAAGATCTGAGCAAGAGTGGCACTCAGTGACAGGTCTGGGGTAATCGATATCCTCTGGCCTCATCC
AGCAGTAGTGGTCATTAGGTTGGGCACCACCTTTTGAGGTGTCACCTACACCCACCTGCAATAAGAAGTTCATATGATACCAATGATTTAGAAAACCTGC
TGTGAAGTTTACTCTACATATTTGAGTGGATCTGACGCCTTATTTCTTGGAACAGGAAAGTGAAAACTCAGGATTAACAGATGATCGGCTCTACCAACCT
GCGCGACGATCCGGTCGATGGTATCGGCGGATGAATTGAAGGTCTTGAGGAGCTGAGCATGGTCATGGACCAGGCCATGGGGTAGTTGAACTTGATGGCG
TCTCCTGCGTCGTAGAAGCCTCCGACCAAGCTCTTCCGGACGGTGCTGTCGGAGAGGCCATCCTTCATGCAAGAATTCCCCCTCCAGCTGACGCCGTTAT
GCTTCGGCAGCGGACCAGCTGACATTCAGAACGATACATCGTCAGAAGACAGAGATGGACACGGAGGGAGGAAAGGAGTGAAAAAACTTACATCGTTGCG
CGTTGAAGAACATGAG