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Detailed information on CNT30595796


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30242602Oryza meridionalisAvena sativa70.8780.2390.29917forward
CNT307928Oryza meridionalisZea mays70.8776.9388.22917forward
CNT30722465Oryza meridionalisTriticum spelta64.373.6990.14832forward
CNT30368741Oryza meridionalisSorghum bicolor70.7178.3485.79915forward

Expression of CNT30595796

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVKVFTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (40 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 3 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICMPPLRRRTR*

>peptide 4 (42 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKIC

Sequence

>CNT30595796
TATAAATCAGGACAGCATAATCCTTCCAGCATCACTTCACTCCAGAATAATCTTTTATATCCCATAGGTCATAGCAAAACACAGTAAGATAAAATTAAGT
GACGATTTAATATGCATCATTTTCAAACTTGCAACTCAGATAAAACATCGACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAAGTTCAAAT
CCAACTTATTCATAAAGCATACTGCAGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACAAGTAG
ACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGAACAGGCACAGCGGCAGCTCCACCAAACTGGCTGATTACTGACCACCACGGAGGCGGA
GCACCAGGTGGAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGG
GGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACG
AAGATCTGCATACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGC
CAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGT
GATGGTCTTCCCTGTGAGGGTCTTGACAAAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA
AGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAA
TGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCATGCCTCCCCTGAGACGGAGGACAAGGTGAAGGGT
CGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTA
TCTTGGATCTTAGCCTTGACATTATCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCA