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Detailed information on CNT30595788


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Oryza meridionalisOryza sativa51.4524.8893.9623forward
CNT30184327Oryza meridionalisSecale cereale9.9156.3485.83120forward
CNT30398990Oryza meridionalisTriticum turgidum9.5827.185.34116forward
CNT30552615Oryza meridionalisOryza glaberrima49.7124.6293.36602forward
CNT30459409Oryza meridionalisSaccharum spontaneum10.8237.0190.08131forward
CNT30716144Oryza meridionalisMalus domestica golden5.3721.3886.1565forward
CNT30369709Oryza meridionalisOryza glumipatula51.4524.9693.74623forward
CNT30100164Oryza meridionalisOryza rufipogon32.0457.4892.01388forward
CNT30575434Oryza meridionalisOryza barthii51.4520.1993.58623forward
CNT30115919Oryza meridionalisOryza nivara20.07104.2990.53243reverse complement
CNT30603626Oryza meridionalisOryza punctata47.9823.192.25581forward

Expression of CNT30595788

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLFSSNLYRIALPSNASPAYTILCKLLYCTLFCLV*

>peptide 2 (41 aa)
MITCGFLASCAVAASSLLPPSAKSISKNRKSYTQTGSVRVG*

>peptide 3 (50 aa)
MLLLPIQYSASSCIVHCFVLFKVCLFLLMLRLRIARLLSSYALLFDALTE*

Sequence

>CNT30595788
ATTAAACTAATCCCCGCTTAACCCAAATCTTCCCCTCCTAATCCCTTTCGCCGCGCTCCGTTCCCTCCCTCCTCTCGTCCCCTTCGCCAAAAAAGCCAAA
CTCCACCGCGCCAATTTTCCTGCCTTTTTCTAGTTTTCCTATACCCCCACTTGGAGTTCTGGAAACATCGATTCGATCCTTCTAGACCCTTCTCCGCCCC
CGTTTTAAAGTGCGCCGGCCTCCCACCCGTCGCCTCATCGCTCGCGGTCGCAGTCGCAGTCGCCCATACCCTTGCCGCACCATGGCTGGAACCCGCGGCG
GATTCGAGTTATTGGCTTATTGCACGTGGTGGCACCAAGCATGAGGCAACAATCGCAAGTGGTGGCACCAAGCATGAGGCAACAACCGCATTACTTGCGA
GAAAGGCACAAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTCTGCCAAATCTATCAGCAA
AAACAGAAAATCATATACTCAGACAGGTTCAGTACGTGTTGGGTGATATTTTGAGTTTGTGGTTGTCAACTTGTCATAAGATTGACATAACAAGGTACAG
TGAAATTACTGTGCCATATCTTGGACCAATGCAATCAGCGAAGTCCTTATCGTGCCAAAATCTAGGATGTGCATGGAATTTCCATCGTTTGCAAACTTGA
GGATGGCCTGCCCTGATGCCCTCAGATGCTGAAGTGTGTGGTTCATGAAAACGTGAGAAGCTAAATAGTGGAGTAACGGGAGTACCAGTGCGGCCACGAT
GAAGAAAGTTAATTTCTGAGAAATTAAGACTTTAGCATGTTGTTTTCAAGCAACTTGTACCGCATTGCACTACCATCAAATGCTTCTCCTGCCTATACAA
TACTCTGCAAGCTCTTGTATTGTACACTGTTTTGTCTTGTTTAAAGTATGTTTGTTTTTGCTTATGTTGAGATTACGAATTGCTCGATTACTTTCATCCT
ATGCATTACTGTTTGATGCATTAACCGAGTGAGATCGACTAGTGCTTCTTCCTGCTCCAGAACACGCTTGATAATTGAGAAGTTTGCAGGGGTTTAGTTA
GATTATGGTTGGGCCCAGTGTCCTAATCTAGGAACCTGCAGCAATCTGCCCCCTTGACCCATGCGTGGCTTGCAGCTCTTGCCAACCTCAAGTTCAGAAG
ATTCTGTACTA