Detailed information on CNT30595781


BLAST search results

BLAST vs Swiss-Prot:
sp|G0LD36|RAS_MELOI, E-value = 3e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670750Oryza meridionalisSetaria viridis15.9123.4893.5177forward
CNT30552732Oryza meridionalisOryza glaberrima73.9774.5896.65358forward
CNT30465762Oryza meridionalisSaccharum spontaneum36.3627.581.82176forward
CNT30100161Oryza meridionalisOryza rufipogon76.0365.3697.83368forward
CNT30115964Oryza meridionalisOryza nivara82.6442.4697.5400forward
CNT30550530Oryza meridionalisOryza brachyantha32.6421.8896.84158forward

Expression of CNT30595781

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MCSACSEMATDRLPSPLALGSTKASPSYAMPPGPMNTGRPQPKSASWIGRRTQLVRPRSERDSLKMSTAVGGGAGLAVSACGGSGASMA

>peptide 2 (56 aa)
QNVSCPKAGRQGKNSQELTCGIKESLLHPTDDRLLRTTPASSPRMCAFVRAYVRVV*

>peptide 3 (31 aa)
TKCVLPKSGKAGEKFAGTNVWNQRIVAASYR*

Sequence

>CNT30595781
CACAAAATGTGTCCTGCCCAAAAGCGGGAAGGCAGGGGAAAAATTCGCAGGAACTAACGTGTGGAATCAAAGAATCGTTGCTGCATCCTACCGATGATAG
GCTGTTAAGAACCACCCCCGCCTCCTCTCCACGCATGTGCGCGTTCGTGCGTGCGTACGTACGTGTTGTTTGATTTCAGAGGATCAGAAGTCGAAGATCA
TCTTGCGGAACTTCTCCATGTGCTCGGCCTGCAGCGAGATGGCCACCGACAGGCTGCCGTCGCCGCTGGCGCTGGGGAGCACGAAGGCGAGCCCCTCGTA
CGCGATGCCGCCGGGGCCCATGAACACCGGCCGCCCCCAGCCGAAGTCGGCGTCGTGGATCGGTAGGCGGACCCAGCTGGTGAGGCCGAGGTCGGAGCGG
GACAGCTTGAAGATGTCCACGGCGGTGGGCGGCGGCGCCGGCTTGGCGGTCAGCGCCTGCGGCGGCTCGGGGGCCAGCATGGCG