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Detailed information on CNT30595768


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674319Oryza meridionalisSetaria viridis58.9881.3488.04811forward
CNT30641251Oryza meridionalisNymphaea colorata66.6251.7885.59916forward
CNT3044330Oryza meridionalisPrunus dulcis64.6572.6985.6889forward
CNT30191122Oryza meridionalisSecale cereale63.8566.9289.29878forward
CNT30306465Oryza meridionalisTriticum aestivum49.675.1189.59682forward
CNT30226205Oryza meridionalisHordeum vulgare66.5588.6687.98915forward
CNT30669573Oryza meridionalisTriticum dicoccoides49.8969.9389.5686forward
CNT30461176Oryza meridionalisSaccharum spontaneum67.2727.1387.78925forward
CNT30143309Oryza meridionalisLolium perenne67.1376.8589.92923forward
CNT30228911Oryza meridionalisAnanas comosus66.6258.8386.14916forward
CNT30652285Oryza meridionalisRosa chinensis66.7675.4386.6918forward
CNT30689809Oryza meridionalisTriticum urartu67.255.7688.85924forward
CNT30704859Oryza meridionalisPrunus avium64.6573.5386.28889forward
CNT30149632Oryza meridionalisBrachypodium distachyon48.2969.2490.36664forward
CNT30116053Oryza meridionalisOryza nivara50.1198.0194.63689forward
CNT30593897Oryza meridionalisEragrostis curvula67.0582.188.07922forward
CNT30603673Oryza meridionalisOryza punctata67.293.4393.61924forward
CNT30174646Oryza meridionalisVigna angularis61.8981.6786.72851forward

Expression of CNT30595768

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (36 aa)
MSSQRSASARNNHQTDRVRTSTRLRTQQLIKQKTYNN

>peptide 3 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKICICKK*

>peptide 4 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRVLTKICMPPRRRRTR*

>peptide 5 (40 aa)
MVSELSTSRVMVFPVKVFTKICIPPRRRSTRWRVDSFWML*

Sequence

>CNT30595768
GACAGCATAATCCTTCCAGCATCACTTCACTCCAGAATAATCTTTTATATCCCATAGGTCATAGCAAAACACAGTAAGATAAAATTAAGTGACGATTTAA
TATGCATCATTTTCAAACTTGCAACTCAGATAAAACATCGACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAAGTTCAAATCCAACTTATT
CATAAAGCATACTGCAGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACAAGTAGACATCAGCAC
CACAAATACTTGACGAACAGAGGCTCGGGACGAACAGGCACAGCGGCAGCTCCACCAAACTGGCTGATTACTGACCACCACGGAGGCGGAGCACCAGGTG
GAGCGTGGACTCCTTCTGTATGTTGTAGTCGGCCAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCC
TCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACGAAGATCTGCA
TACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGAT
CAGACGCTGCTGGTCAGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTCTTC
CCTGTGAGGGTCTTGACAAAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGC
CATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGA
AGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGAAGGGTCGACTCCTTC
TGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCT
TAGCCTTGACATTATCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATCTGCAAGAAATAATC
ACCAAACAGATAGGGTAAGAACTAGCACAAGATTAAGGACACAACAACTGATCAAACAGAAAACATATAACAACA