Detailed information on CNT30595765


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691495Oryza meridionalisOryza sativa62.9137.4197.79770forward
CNT30587177Oryza meridionalisMusa acuminata5.6421.0485.5169forward
CNT30552698Oryza meridionalisOryza glaberrima82.4368.3697.921009forward
CNT30369691Oryza meridionalisOryza glumipatula62.9157.5598.18770forward
CNT30107391Oryza meridionalisOryza longistaminata41.6745.9997.45510forward
CNT30100577Oryza meridionalisOryza rufipogon44.8548.3797.45549forward
CNT30575449Oryza meridionalisOryza barthii82.4387.2898.021009forward

Expression of CNT30595765

Peptides detected in this lncRNA

>peptide 1 (56 aa)
AQISLRRERHVSRLLLRFHGHMPRHGAPRSRHSRARARAVLTPRPPPRSGALSSPF*

>peptide 2 (49 aa)
MQGDGDKLVAATAHLARKLLGFSDHTDDFLASCAVVVSSLLPPFAKTIK*

>peptide 3 (75 aa)
SDITSPGATCVAAFASLPRPHAAPRRATVSPLARAGARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

>peptide 4 (73 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENFWVFQTIPMIFLQVVQLLSQACCLPLPKL*

>peptide 5 (76 aa)
MKIVPSVLIMKAAHVNCLVHPDHLLLFTLIRLRRLYIVYWLPLLNVSLIAHDMLAWKGSFELIMRFAGISLGMPSE*

>peptide 6 (80 aa)
LRYHFAGSDMCRGFCFASTATCRATARHGLATRARGRAPSSRRVRRPDPAHSPPPFEPPSPAPPRATARRSRADLVNSPP*

Sequence

>CNT30595765
GCTCAGATATCACTTCGCCGGGAGCGACATGTGTCGCGGCTTTTGCTTCGCTTCCACGGCCACATGCCGCGCCACGGCGCGCCACGGTCTCGCCACTCGC
GCGCGCGGGCGCGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGGCGCACTCTCCTCCCCCTTTTGAGCCGCCATCGCCGGCACCGCCGCGCGCGA
CGGCGCGGCGCAGCCGCGCCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCACCACCCAAATCGCAATGCCTTTCTCCGCTAGCTCC
CGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCT
TGCAAGAAAACTTTTGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATA
AAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAA
CTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAAATGTAGGCAGTGCCACCAGGCAATGGCAAATGAACTCA
TCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGGTAAGGAAGTCAAACATCTAATATGTATGAAAATTGT
TCCTAGTGTTCTTATAATGAAGGCTGCACATGTAAACTGTTTAGTCCATCCTGATCATCTATTGTTGTTTACTCTGATCAGGTTACGTCGTCTCTACATT
GTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTGCCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGTTTGCAGGAATTTCTC
TAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCATCTGTGCTTTGGTAGCGGAACGTT
CATTGCCCCATGCTACTCAGCTTTGTACTTCTGTAAATCAAATGAGATTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAA
GCAAATGAAAAATTCCAGTTTTTG