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Detailed information on CNT30595740


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT003033, E-value = 3e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690829Oryza meridionalisOryza sativa23.3510.9910060forward
CNT30677703Oryza meridionalisSetaria viridis52.9237.9999.26136reverse complement
CNT30505424Oryza meridionalisNicotiana attenuata52.9229.1897.06136reverse complement
CNT3092080Oryza meridionalisSolanum tuberosum52.9223.3397.06136reverse complement
CNT30184864Oryza meridionalisSecale cereale52.9223.4996.32136reverse complement
CNT30397001Oryza meridionalisTriticum turgidum52.9214.7396.32136reverse complement
CNT30438181Oryza meridionalisAegilops tauschii52.9215.3796.32136reverse complement
CNT30364089Oryza meridionalisSorghum bicolor46.6926.4395120reverse complement
CNT30153253Oryza meridionalisPrunus persica23.350.2710060reverse complement
CNT30574572Oryza meridionalisVitis vinifera52.922.0297.06136reverse complement
CNT3056135Oryza meridionalisAmborella trichopoda53.3112.9688.32137forward
CNT3099908Oryza meridionalisOryza rufipogon47.4744.53100122reverse complement
CNT30725732Oryza meridionalisLupinus angustifolius52.9230.1695.59136reverse complement

Expression of CNT30595740

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LRAPPRHQSCVAYACAPKRLLTLYNSVGRATATQPTLAACCPKSAD*

>peptide 2 (84 aa)
ARPTPSSVLCCLCLRPKTVADFVQLRRARYGNTAYACCLLSKERRLATELGYGFPIGDPWITDALSPHGLSPLKASFLLNARASI

Sequence

>CNT30595740
CTGCGCGCCCCACCCCGTCATCAGTCCTGTGTTGCCTATGCTTGCGCCCCAAAACGGTTGCTGACTTTGTACAACTCCGTAGGGCGCGCTACGGCAACAC
AGCCTACGCTTGCTGCTTGCTGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAGACGCTCTCTCT
CCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATC