Detailed information on CNT30595739


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552757Oryza meridionalisOryza glaberrima51.8239.3593.39242forward
CNT30107739Oryza meridionalisOryza longistaminata36.8311.7695.93172reverse complement
CNT30603690Oryza meridionalisOryza punctata32.764.7892.81153forward

Expression of CNT30595739

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLFFTLFSPTLILLLFLVGFLVRPGRSRVTGP

>peptide 2 (51 aa)
MEITTREIKNKLPSDDMIRDALFYSLLPHSDSPPLLGWFLGAAGEVKGHWAS

>peptide 3 (47 aa)
MVKRKVLPCSRRDPMKPKEEEEEEEEKKENGRKIFLEHGDHNEGNQK*

Sequence

>CNT30595739
GGGGGATATTGGATTATCAATAGGATTGTAAAATGGTACTAGTAATTACATAGTAGAGCAGAAGGGTAACCCTTTTCTTCCCATTTATCAGCTTATCATC
ATCCAATAGATAATAATAATAATAATAGAGGGAGGAGAAGTAGCAGTTACTAGCCGGTGGAGCTGATTCGAGCAGGGGACGATTTGGAGTTTCTTCATCA
TGGTGAAGAGGAAGGTTTTGCCATGTAGTAGGAGAGATCCCATGAAGCCAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAGAAGGAAAATGGAAGAAAAAT
CTTCCTAGAACATGGAGATCACAACGAGGGAAATCAAAAATAAACTCCCTTCTGATGATATGATACGCGATGCTCTTTTTTACTCTCTTCTCCCCCACTC
TGATTCTCCTCCTCTTCTTGGTTGGTTTCTTGGTGCGGCCGGGGAGGTCAAGGGTCACTGGGCCTCG