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Detailed information on CNT30595723


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554531Oryza meridionalisOryza glaberrima95.9552.9897.34640forward
CNT30100316Oryza meridionalisOryza rufipogon85.1657.6197.71568forward
CNT30575214Oryza meridionalisOryza barthii85.1650.7197.71568forward
CNT30116540Oryza meridionalisOryza nivara80.9657.6397.59540forward

Expression of CNT30595723

Peptides detected in this lncRNA

>peptide 1 (67 aa)
HNLAVAGLFSNLYLALMASVVINFRNLRFLLTKFLLQVEHGDFRHLSMMNYLLAYSFCYISCGMFFC*

>peptide 2 (38 aa)
MLEHIVLKLVYLYVSCDIYWGKHNKLSGYSHVSCYLPYM

Sequence

>CNT30595723
CACAACTTGGCGGTGGCTGGTTTATTTAGCAATCTCTACTTGGCTTTGATGGCCAGTGTGGTAATTAATTTCAGAAATCTCCGATTCTTGTTGACAAAAT
TTCTTTTGCAGGTTGAACATGGTGATTTCAGACATTTATCAATGATGAATTATCTGCTTGCCTATTCTTTCTGTTACATCAGTTGTGGGATGTTTTTCTG
TTAAATTAATCTAGGTTGCTCTCTTGATCTGGTCTAGACAGAAGCAAAGGTTGCAATAAGGAAAACAAAAGGAAAAGCTCAAAATATCCATGTCAACTTG
AAGATATTGTGGATTGCAGATTGTGAGGGTTACATTTGAAGTTATTGTGGATGACGCGAATCAATTGTGTAGATACTTGTGTTATTTTCTCTTAGTGGAG
TTCTCTTGAATGCACCTGAAGACAACTCTTTTGCTTTGAGCCTTTCAAGTGTTTGTTAAGTTGTGGAAAATTGTATCCATTTTGTAATGTTGGCTACTTT
GCACCTCCACAACAAGTGTCCAAGAGGGGGTAACCAAAATAGGCTAGATCATGTTAGAACATATTGTTCTTAAACTTGTGTATTTGTATGTTTCATGCGA
CATTTATTGGGGAAAACACAATAAACTTTCAGGGTATTCACATGTTTCTTGCTATTTACCATATATG