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Detailed information on CNT30595696


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-156

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-127

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190365Oryza meridionalisSecale cereale63.5963.4192.16676forward
CNT30396078Oryza meridionalisTriticum turgidum43.5624.4592.66463forward
CNT30143319Oryza meridionalisLolium perenne64.0677.392.51681forward
CNT30107359Oryza meridionalisOryza longistaminata79.4999.5394.56845forward
CNT30575387Oryza meridionalisOryza barthii53.8110097.03572forward
CNT30115854Oryza meridionalisOryza nivara68.7796.9596.03731forward
CNT30550711Oryza meridionalisOryza brachyantha65.95100.1492.15701forward

Expression of CNT30595696

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (41 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKI

>peptide 3 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRVLTKICMPPRRRRTR*

Sequence

>CNT30595696
TATAAATCAGGACAGCATAATCCTTCCAGCATCACTTCACTCCAGAATAATCTTTTATATCCCATAGGTCATAGCAAAACACAGTAAGATAAAATTAAGT
GACGATTTAATATGCATCATTTTCAAACTTGCAACTCAGATAAAACATCGACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAAGTTCAAAT
CCAACTTATTCATAAAGCATACTGCAGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACAAGTAG
ACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGAACAGGCACAGCGGCAGCTCCACCAAACTGGCTGATTACTGACCACCACGGAGGCGGA
GCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGG
GGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCTGTGAGGGTCTTGACA
AAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGC
CAGCAAAGATGAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGT
GATAGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA
AGGGTCCTGCCGTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAA
TGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCT