Detailed information on CNT30595677


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZSP6|AIR1L_ARATH, E-value = 9e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691617Oryza meridionalisOryza sativa76.9965.6192.42475forward
CNT30676135Oryza meridionalisSetaria viridis15.0724.7394.6293forward
CNT30369534Oryza meridionalisOryza glumipatula71.4772.1890.48441forward
CNT30115994Oryza meridionalisOryza nivara49.4342.3696.72305forward

Expression of CNT30595677

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MPRMLPLMAVHRHTAASRSTSPSSSGQHGSAGACHPEHDEVHGQEQCERLGRHCYVPEIDRSQAELITS*

>peptide 2 (49 aa)
MRTYGWREQESYKEDKGESTERIQTGTVIRTYSQHARSIMRCVACKVRT*

>peptide 3 (50 aa)
KLQTKALLEVGTGTQASTGPYNKCARTDGGNKSPTKKTKERVQRESKLVP*

>peptide 4 (35 aa)
MHDRLCVALHAKYVRNVVANKQSSKQIKPSVVKAN*

>peptide 5 (46 aa)
MAGTRVLQRRQRREYRENPNWYRDTYIQPACTIDYALRCMQSTYVT*

Sequence

>CNT30595677
AAGTTGCAAACCAAAGCTTTATTAGAAGTTGGTACCGGCACACAAGCTAGCACCGGCCCTTACAACAAATGCGCACGTACGGATGGCGGGAACAAGAGTC
CTACAAAGAAGACAAAGGAGAGAGTACAGAGAGAATCCAAACTGGTACCGTGATACGTACATACAGCCAGCATGCACGATCGATTATGCGTTGCGTTGCA
TGCAAAGTACGTACGTAACGTAGTAGCAAATAAACAGAGCAGCAAGCAAATCAAACCAAGCGTCGTCAAAGCCAACTAATCACCGTGCGTACGTAGGATC
AACCCGCTGCTTAGCACTTGAAGCCGGTGGGCACGGTCTTGCCACAGTAGTTGAGGTTGATGCCGAGGATGTTGCCCCTGATGGCCGTGCACAGGCACAC
CGCCGCCTCGAGGTCGACGAGCCCCTCCAGCAGCGGGCAGCACGGCTCCGCCGGCGCTTGCCACCCCGAGCACGACGAGGTTCACGGCCAGGAACAGTGC
GAACGCCTTGGACGCCATTGCTACGTACCCGAGATCGATCGATCACAAGCGGAGCTAATCACTAGCTAGCTAATTAAGAGCTCTTGATCAGCTAGAGATG
ATTAGGCTGCTTGAGAT