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Detailed information on CNT30595676


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670613Oryza meridionalisSetaria viridis48.7550.2690.26195forward
CNT30372291Oryza meridionalisArabidopsis thaliana24.529.6183.6798forward
CNT30302990Oryza meridionalisTriticum aestivum49.2569.3787.82197forward
CNT309074Oryza meridionalisZea mays38.7553.8290.32155forward
CNT30217218Oryza meridionalisKalanchoe fedtschenkoi2519.2382100forward
CNT30649581Oryza meridionalisRosa chinensis27.2517.1482.57109forward
CNT30100554Oryza meridionalisOryza rufipogon2530.399100forward
CNT30575392Oryza meridionalisOryza barthii2532.57100100forward
CNT30115868Oryza meridionalisOryza nivara24.2536.4710097forward
CNT30603594Oryza meridionalisOryza punctata2534.695100forward

Expression of CNT30595676

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MATQRQQVFHSHQLRLTSQSRASRSTCLPRRR*

>peptide 2 (40 aa)
MQSQQLSTYAGSSRIPYRERGVGRQGTKCTDLPLPTGLQS*

>peptide 3 (85 aa)
MYRPAVAHWVAILTQTDGHPTSTSFPLSPTEVDQPVKSIAEYMLAKEKMSQHGQPNRPQKGWWLAIPAKGYQSTQLWSGCAVHCIH

Sequence

>CNT30595676
AGAGAGACGGCTTAGCTATTTGCAAATAAGCTTGACAAGATAGATGATGCTCCAAAAGGATGCAATCTCAGCAGTTGAGTACTTACGCTGGTTCATCTAG
AATTCCCTATCGGGAAAGAGGAGTGGGGCGACAAGGGACCAAATGTACAGACCTGCCGTTGCCCACTGGGTTGCAATCCTGACCCAAACGGATGGCCACC
CAACGTCAACAAGTTTTCCACTCTCACCAACTGAGGTTGACCAGCCAGTCAAGAGCATCGCGGAGTACATGCTTGCCAAGGAGAAGATGAGCCAGCACGG
ACAGCCGAATAGACCACAGAAAGGATGGTGGTTAGCAATCCCAGCGAAAGGCTACCAGTCGACACAGCTTTGGAGTGGTTGTGCAGTCCATTGCATTCAT