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Detailed information on CNT30595669


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552727Oryza meridionalisOryza glaberrima54.131.4490.66482forward
CNT30107360Oryza meridionalisOryza longistaminata60.724293.9541forward
CNT30575101Oryza meridionalisOryza barthii99.7877.7888.53889forward
CNT30603641Oryza meridionalisOryza punctata35.5838.2489.27317forward
CNT30550686Oryza meridionalisOryza brachyantha16.524.6287.76147forward

Expression of CNT30595669

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MHKDEDTCKRQNIFTNGSNLHETEHVAAASRS*

>peptide 2 (30 aa)
MEGLQGLQSTLVRTPVYSCTKLIYFRKRRE*

>peptide 3 (29 aa)
MVEREMRSMCDGREGKALLSAALMNLPAG*

Sequence

>CNT30595669
CACACACAAATGCAGTGCAGATGCAGCTACACAAGCACAAGCATGGAAGCTGCCTAGCCAAGTGATTGCTTCCTGTTCCTGGGAATAGAGCTAGAAATAT
TGGCAGATTCATGGTCGAAAGAGAGATGAGATCGATGTGTGATGGAAGAGAAGGGAAGGCATTATTGAGTGCAGCGTTGATGAACCTGCCGGCCGGCTAA
TTAATTAGACTGAAAGTCTGAAACTGGCTCAAAGGTTCACCAGCACTGCACCCAATCACGCCTTTGCTCTCTCTGGGGAAATTAATTAGTTTGTGCTAGT
TCATCAGATGCACACACAATCCATATCCATATCCAAATCTTGTAGTACTACTAGTTCTCAATTCTCATTACAGATTTGACAAAGTTCATATGAGAGAAAG
GGGATAGATGCAGGGATGCATTTGATAAGTTAGCTCTCTTCACTCTCACAAGATGCGTTCTTGTCCCAGTCTCAAGATCTCAAGATGGTACTAATTTTTT
TTTTCCAAAATTAGTAAATGAGAAAATGGAGGGACTACAAGGACTCCAGTCTACTCTTGTACGAACTCCAGTCTACTCTTGTACGAAGTTGATTTATTTT
CGGAAACGGAGGGAATAGGAGGCTAGCTAGATCTCCATGCATAAGGATGAAGATACATGTAAGCGGCAGAACATTTTCACAAACGGATCGAATCTGCATG
AAACTGAACATGTAGCAGCAGCCAGCAGATCGTAGAGACGGAGGATGGAGCAAGCAAGCGATCGATCGAGATGCAACACAGCTAAAAGAGAATAGAAGAG
AAGAGCACCACACTGCACAGAGATCAGAGGAAGACGACTCGACGAGTAGCATATGTTCTTCAGGAAGATGAGCATATAGTATATAAATCAG