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Detailed information on CNT30595662


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520108Oryza meridionalisSetaria italica11.1531.0597.8995forward
CNT30591229Oryza meridionalisMusa acuminata8.2222.0885.7170forward
CNT30246308Oryza meridionalisAvena sativa12.0936.0184.47103forward
CNT30459519Oryza meridionalisSaccharum spontaneum13.538.3396.52115reverse complement

Expression of CNT30595662

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSFIKKEKAKIARAWCICTKGAPFQRAYIHTYCTTT*

>peptide 2 (44 aa)
MVYMYKRGTISASLHSHVLYYYISWSRLLRLDVAVRSPGNGSPG*

>peptide 3 (52 aa)
MKVPLVWVKKQPKFAPTTHCHPTPYLLSNSCNINKQQIEPKIISSDPSCTID*

>peptide 4 (67 aa)
MDSTKSMEMEEIGVEQLAALMCPAMARQSATSKRSSARDAADVAAACIRAGMSVSSTRAFPSSIAAS*

Sequence

>CNT30595662
AAGTGGAGATGAAACGCTGAAAAACTAAAAATGGCCAGGAAACGTGGAGATGTAACGCTGTCAAACTAAAAATGGAAGCTTGATAGTAGGTCGCAAGAAC
ATGGTGACATGAGCTTCATCAAGAAGGAGAAGGCAAAGATTGCACGAGCATGGTGTATATGTACAAAAGGGGCACCATTTCAGCGAGCTTACATTCACAC
GTACTGTACTACTACATAAGTTGGTCTCGCCTGCTACGGCTGGACGTCGCCGTCCGTTCGCCGGGGAATGGATCTCCGGGGTAAGATTAGGAGGAAGGAG
AGGCGCTCGAGGGAGAAGTAGATGAAGGTGCCGCTGGTGTGGGTGAAGAAGCAGCCGAAGTTTGCGCCCACCACGCACTGCCACCCCACCCCGTACCTCT
TGTCGAACTCCTGCAACATCAACAAACAACAAATCGAACCCAAAATCATCTCCTCCGATCCATCCTGCACAATCGATTGATGGATTCAACCAAATCCATG
GAGATGGAGGAGATAGGTGTGGAGCAACTTGCCGCCTTGATGTGTCCGGCGATGGCGCGGCAGTCGGCGACGTCGAAGAGGTCGAGCGCGCGGGACGCCG
CGGACGTGGCCGCCGCCTGCATCCGCGCCGGCATGTCCGTGTCCTCCACCCGCGCCTTCCCCTCCAGCATTGCCGCCTCCTAGGAGCACCTACCACTCAA
CCCCCTCGATCGATTCCTACCAATTCTTGATTCCCCGACGCGAGGAAGAGGACGATGCTCGCTTGCACGGCTGCAGCTAATGAGCCAGAATAAATGGAGG
AGAGAGAGAAGAGAGAAGGGAATCAAGGAGAAGAGTGGAGGAAGAGGAAAAG