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Detailed information on CNT30595657


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 1e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-118

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691368Oryza meridionalisOryza sativa100.3848.995.971067forward
CNT30685722Oryza meridionalisTriticum urartu65.484089.94696forward
CNT30100520Oryza meridionalisOryza rufipogon90.1296.5794.57958forward

Expression of CNT30595657

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKICICKK*

>peptide 2 (52 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRVLTKICMPPRRRRTR*

>peptide 3 (40 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRSTRWSVDSFWML*

Sequence

>CNT30595657
AATCCTTCCAGCATCACTTCACTCCAGAATAATCTTTTATATCCCATAGGTCATAGCAAAACACAGTAAGATAAAATTAAGTGACGATTTAATATGCATC
ATTTTCAAACTTGCAACTCAGATAAAACATCGACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAAGTTCAAATCCAACTTATTCATAAAGC
ATACTGCAGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACAAGTAGACATCAGCACCACAAATA
CTTGACGAACAGAGGCTCGGGACGAACAGGCACAGCGGCAGCTCCACCAAACTGGCTGATTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTAG
ACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATCCCCTCCTTGTC
CTGGATCTTGGCCTTCACATTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCTGTGAGGGTCTTGACAAAGATCTGCATACCACCA
CGAAGGCGGAGCACAAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAAATGAGACGCT
GCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAG
AGTCTTGACGAAGATCTGCATGCCACCACGGAGGCGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCGTCCTCC
AGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCAATGGTGTCAGAAGACTCCA
CCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATCTGCAAGAAATAAT