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Detailed information on CNT30595655


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696172Oryza meridionalisOryza sativa38.7839.3791.99287forward
CNT30369438Oryza meridionalisOryza glumipatula32.381.0285.36239forward
CNT30104635Oryza meridionalisOryza rufipogon38.7874.9390.94287forward
CNT30576854Oryza meridionalisOryza barthii37.0315.487.96274forward
CNT30117174Oryza meridionalisOryza nivara30.9584.1987.77229forward

Expression of CNT30595655

Peptides detected in this lncRNA

>peptide 1 (56 aa)
LSFLSMPGHCRHRSISSTVAPQPKPSRHWLCLGEVNPFSPFPPSLPPHSNHHRHLF*

>peptide 2 (50 aa)
MRDAREHVWPPASSPIGHRRAGAHPSPSSLLLGQKRGEKKMTGGRRKRKR*

>peptide 3 (48 aa)
SLFPLHARPLPPPVDLLHRSPTAQTLAPLALPRRGESVFPLSPFSPTP*

Sequence

>CNT30595655
TCTCTCTTTCCTCTCCATGCCCGGCCATTGCCGCCACCGGTCGATCTCCTCCACCGTAGCCCCACAGCCCAAACCCTCGCGCCATTGGCTTTGCCTCGGC
GAGGTGAATCCGTTTTCCCCCTTTCCCCCTTCTCTCCCACCCCATAGCAACCACCACCGCCACCTCTTCTAACCGGCCGAAGCAAGCTTTTACGCTCGCC
GTTCCGGCCACATCCTTCTCTCCCTCTGCCGACCACTGCCTTCCCCGGATGCGCGACGCTCGGGAACACGTGTGGCCACCGGCGTCGTCACCTATTGGCC
ACCGGAGAGCCGGCGCCCATCCTTCCCCCTCCTCTCTGTTACTCGGCCAGAAGAGAGGAGAGAAGAAGATGACGGGAGGAAGAAGGAAAAGAAAAAGATA
AAGATAAAGATAAAGAGAGTCTATTTTATTCTGGATGGCAACCTGTGGTATTTCGAGCATCGGATAATCAGGTTGCCTATCTCGGATTTATTTGCGTTGG
AGTAAGAGTCCATTTGATGTTCTTGCTGAAGCCAGGAGTTCAATCATATAAATTATTTCCCTTTTAATTTAGTCTTCAAATCTAGGTTATTTAGATGGTT
TAAGTCTATAACAAAACAGCAGAGTTAGGCCATTCTAGAGCTTCTGCTGTAATAGTTAGCCACAATCTTATAAATATCATATTATTTTATATAAAAATAT
CTCCTTTGGAGTCTTGACCAAATGTATGTGATGAAGATCC