Detailed information on CNT30595638


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552889Oryza meridionalisOryza glaberrima27.1936.6292.13394forward
CNT30370294Oryza meridionalisOryza glumipatula26.8546.0495.63389forward
CNT30101298Oryza meridionalisOryza rufipogon26.9825.1494.88391forward
CNT30577656Oryza meridionalisOryza barthii41.8987.7294.4607forward
CNT30117499Oryza meridionalisOryza nivara10.8443.8597.45157forward
CNT30604829Oryza meridionalisOryza punctata27.9555.5690.37405forward

Expression of CNT30595638

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MARLQGAAAWRGGRERGRRSSRCCCCCWLRAQPSLGRGGTRDV*

>peptide 2 (42 aa)
MLEFQWLLSLRRGWHLEWGNFLVFFIHKLKAIPTRGRLDTYI*

>peptide 3 (29 aa)
MAPVKGGRAALPARAARGLRAAAGTPAPV*

>peptide 4 (77 aa)
AVPDCLPHVPHLEPHPHHRGPLDVVGFGEGRPPTAGTKVSDHRLDAVVTMAPVKGGRAXAPGASPSSPRPTRCSWFW*

>peptide 5 (60 aa)
MFSLQESVALIPDVRISMVTLIEKRMALRVGQFSGFLHSQTQSHTYPREVGYIYITIAGC*

>peptide 6 (54 aa)
MSPAMEPLMLLRKVSTSTTAARAASSAASASASALAAANSAAASLAALAAAAAV*

Sequence

>CNT30595638
TCGCCGTACCGGACTGCCTCCCACATGTGCCGCACCTGGAGCCTCACCCTCATCACCGCGGCCCACTCGATGTAGTTGGTTTTGGTGAGGGTAGGCCACC
CACCGCCGGGACCAAAGTCTCTGACCACCGTCTAGACGCCGTGGTGACCATGGCGCCGGTCAAGGGAGGGAGAGCCGNCGCACCTGGAGCCTCACCCTCA
TCACCGCGGCCCACTCGATGTAGTTGGTTTTGGTGAGGGTAGGCCACCCACCGCCGGGACCAAAGTCCCTGACCACCGTCTGGACGCCGTGGTGACCATG
GCGCCGGTCAAGGGAGGGAGAGCCGCGCTGCCTGCGAGGGCCGCGCGTGGGCTCCGGGCTGCCGCCGGCACGCCCGCGCCCGTCTAGGTTCCCGTCGGCG
GGCGCGCGGTCCCTTGGGCCGCCTCCGCCGCCGTGGAGGTGGGCTGCTGCCCACCGCTCTGCCCGCTCCCGTGCCCTACCTCTCGCAAGCTCCTCAAGCT
CCCCGTCGGCGGTGATGTCGCCGGCGATGGAGCCGTTGATGCTGCTGCGCAAGGTCTCAACCTCTACCACCGCCGCACGTGCCGCATCTTCCGCCGCCTC
TGCTTCCGCCTCCGCCCTGGCTGCTGCCAACTCCGCTGCCGCCAGTCTGGCCGCCCTTGCTGCTGCTGCAGCGGTGTGAGCTGTTGCTCGCCTGCGCTCT
TCTGCTGCGGCGAGCTCGGCGTCCTGCTGACGCCGAGTGCTCGAGACGACCGAACGCCGAGACCGAACGTCGGACATGGCGCGCCTCCAGGGGGCTGCTG
CGTGGAGAGGGGGAAGGGAAAGGGGAAGGAGAAGCAGCCGGTGCTGCTGCTGCTGCTGGCTGAGAGCTCAACCGAGCTTGGGAAGGGGTGGAACAAGAGA
TGTTTAGCCTACAGGAAAGTGTGGCTCTGATACCAGATGTTAGAATTTCAATGGTTACTCTCATTGAGAAGAGGATGGCACTTAGAGTGGGGCAATTTTC
TGGTTTTCTTCATTCACAAACTCAAAGCCATACCTACCCGAGGGAGGTTGGATACATATATATAACCATAGCTGGCTGCTAGCCTATTGCTGCACCCTCC
TAGTCTAAAATTTGAAATTTGAATGGGATGCTGTCCTAGAGGGCATCCAAACTGAATAACACATAAAGGAGGCATAAAGGAGATGCTAACTGCTGCTGTC
CTACTAACCGCAGCTGTCCTAGCAACTGAAAAATATGCTAAAGGAGTAGATACTGTCCTGAAAAGGTGAAACTACCCAAAAGCAAAAAGAAGAATCACGA
CCAAGGACCAGAAATACTTATCCATCATAAAGTGAGGGTTCACCTGGGTGGGGGCAGATCCTCCACCATAGCCATGTCGCACACCCCAGCTGTGTTCAAA
GAGAGGAAGCGAGTCGCCGGGCGATTGCTGAGAGAGCATCATGGTGCAG