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Detailed information on CNT30595624


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000990, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692394Oryza meridionalisOryza sativa59.475.6995.87436forward
CNT30555231Oryza meridionalisOryza glaberrima75.6119.9489.73555forward
CNT30109401Oryza meridionalisOryza longistaminata61.1754.4992.2449reverse complement
CNT30578145Oryza meridionalisOryza barthii70.9882.9691.55521reverse complement
CNT30604093Oryza meridionalisOryza punctata41.4276.9690.79304reverse complement
CNT30551432Oryza meridionalisOryza brachyantha31.3411.5587.83230reverse complement

Expression of CNT30595624

Peptides detected in this lncRNA

>peptide 1 (55 aa)
EERRSDRCRSIGLTVEISYHLLSPPPVGPPVCRWSDRRLSPVGPPLSRRLDRRTR*

>peptide 2 (50 aa)
MISDHHGHRLTTKPTPGPSPQILSRGIESPTHETNKETIFRDQAITNLTH*

Sequence

>CNT30595624
CTGAAGAACGTCGGTCTGACCGATGTAGATCGATCGGTCTGACCGTCGAGATCAGCTACCACCTGCTGTCACCGCCGCCGGTCGGACCGCCCGTATGCCG
CTGGTCTGACCGCCGCTTGTCGCCGGTCGGACCGCCGTTGAGTCGCCGGTTAGACCGCCGCACCCGATGAAACACAAATCGAAGAACTCTCAAAGTAGAT
GACAACTTTATTACTTCTCTCTGTGTTTACAAAGTGCAACAACAGCACTCCTTACAAAAATCTCGACTAAACTCGAAACCCTAAAACACAACGCTATGAA
AAGCGACACAAAAGAGATACCGGGAAGCCTCACGCTCCCCCTCTATTTATACATGAGGTAAGCAGCCTAAAGCCACGAACCAAACTCATACTAAGAGTCC
TAATCCCCATAGGAAACCTCCTAGTACAAGAAACAAACTCTACATAACCAATCATACCAAATTTGGACTCCTTCNAAATTCGACTCCGTATCCCATACGC
ACACAATACCTCCATCGTATGCCATATGGAATCTCCATCAACCACGTGCATCAACTCTAGCCTAAGTATCCCGCATGATATCTGACCACCACGGACATCG
TCTTACCACCAAGCCGACTCCCGGTCCATCACCGCAAATACTCTCCCGAGGCATCGAGTCACCTACACATGAAACAAACAAAGAAACCATATTCCGAGAC
CAAGCTATCACCAACTTGACTCATTAGTAGCAAA