Detailed information on CNT30595602


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000626, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552010Oryza meridionalisOryza glaberrima23.3240.8398.42316reverse complement
CNT3066602Oryza meridionalisLeersia perrieri21.721.9685.71294forward
CNT30109999Oryza meridionalisOryza longistaminata29.1530.298.99395forward
CNT3099970Oryza meridionalisOryza rufipogon59.1953.1598.5802forward
CNT30574750Oryza meridionalisOryza barthii48.3462.3898.63655forward
CNT30115766Oryza meridionalisOryza nivara59.1962.3298.63802forward
CNT30550371Oryza meridionalisOryza brachyantha2914.6689.31393forward

Expression of CNT30595602

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MEKEDLPKLFSCPTWPSTCLVDTFAASAVEASSSTPPAKLRSSENTAWVACRAAVSGHCWG*

>peptide 2 (54 aa)
MNSFQQKLAGRFRDPTTSHWSSLRKRGGDELLDFLGTRSRYNVVMLTPGIKTKW*

>peptide 3 (44 aa)
MLPDCAEEAQLIHDDEFYQESSGDIDTPLPSSCRDGEGRPAKVV*

>peptide 4 (44 aa)
MHCCRLYMKPNEIQEPYVDCRTNYFPSKEGEILVELYCLWCPAV*

>peptide 5 (30 aa)
MLCLVSFIESMRFLSQSGSLGGGVPFRRPK*

>peptide 6 (89 aa)
TSTGPGRAVGRPGRHRRRPPLIAVGSGRSLTMPWQQPRRRRLASSSHAGVAEFILPRPAGPRAGARVGGKPPNRTASCPRGPPYQMLLK*

>peptide 7 (63 aa)
MGCMQGSGVRPLLGVERNPGEGSSMEDAVLGFIYREHEVSFTKWKLRWWSAFSQTEMRCIGVP*

Sequence

>CNT30595602
CACATCCACAGGGCCCGGTAGGGCGGTCGGCCGCCCCGGACGGCACCGCCGCCGCCCGCCGCTGATCGCCGTTGGTAGTGGTAGGAGTTTAACTATGCCG
TGGCAGCAGCCGCGGCGGCGGAGATTGGCCTCGTCCTCGCACGCCGGAGTCGCCGAGTTCATCCTGCCGCGGCCCGCAGGCCCTCGCGCGGGTGCTCGGG
TCGGGGGAAAGCCTCCAAACCGTACGGCGTCGTGTCCGCGAGGGCCGCCGTACCAGATGCTGCTCAAGTAGCCCGGCGTGCATCTCGTTAGAGATCTATA
CGAAGGGGAGGACATGAACAGCTTCCAGCAGAAGCTCGCGGGGAGGTTCAGAGATCCGACCACATCACATTGGTCATCCCTAAGAAAGCGTGGAGGCGAC
GAGCTACTAGATTTTCTGGGAACAAGAAGTCGATATAATGTCGTCATGTTAACTCCTGGAATCAAAACCAAATGGTGAAATGGAGAATCATAGTCGTTTC
CATGTTCATAGTAGCATATTGTCATAACTCATAAATTCTGACAAGTATTTGTGTAGGTCTATATGTTTTATGCTTCAGAGCTGTGGCACGCTCATTGACT
TATGGATCTATGGATAACTATTTTAGGTTAGCACCTAGCTGATGCTTCCAGACTGTGCCGAAGAAGCACAACTGATACATGATGATGAATTCTATCAAGA
GAGCTCCGGGGATATAGACACTCCATTACCATCTTCTTGTCGAGATGGAGAAGGAAGACCTGCCAAAGTTGTTTAGTTGCCCTACATGGCCTAGCACCTG
CCTAGTGGATACCTTCGCTGCATCGGCCGTTGAGGCATCGTCTTCAACACCACCAGCGAAGCTGAGAAGTAGTGAGAACACTGCATGGGTTGCATGCAGG
GCAGCGGTGTCAGGCCATTGTTGGGGGTAGAGAGGAATCCAGGAGAAGGGTCCTCCATGGAAGATGCTGTGCTTGGTTTCATTTATAGAGAGCATGAGGT
TTCTTTCACAAAGTGGAAGCTTAGGTGGTGGAGTGCCTTTTCGCAGACCGAAATGAGATGTATTGGAGTACCTTGACGAAGCATGGGCTGGAAAGTTGTT
TTTGGTGGTGATCGCCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGGTGCAGTTTGGCTGGTCTTGCATTGTGCCTGTCAGATTAGTGCTGTACT
TGATGCATTGTTGTCGTTTATACATGAAACCAAATGAAATACAAGAACCATATGTAGATTGCAGAACAAATTATTTTCCTTCTAAAGAGGGCGAGATCTT
AGTAGAACTTTATTGCTTGTGGTGCCCTGCTGTTTGACAATGTAATTGGTGCGAG