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Detailed information on CNT30595595


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697054Oryza meridionalisOryza sativa28.9729.7196.95197forward
CNT30115670Oryza meridionalisOryza nivara37.6510097.66256forward

Expression of CNT30595595

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MEIHRSFDLPRDNIQMSQGHLLLSDCNPDILHSRLFLIWGLVSIVCCSANTVGMYPPAESVTLRRTSIVFVSTNSIS*

>peptide 2 (53 aa)
MTVQVDKLYEGHRRKNENSPGRKRIHLLCYEHMTHSMATFQFLFTNIGPNAKI*

Sequence

>CNT30595595
GATAGAGTTGACTCGAGTGATTCAAGCTGCGACGAACGACAGGAGATGATCCCCACGGATTGCCGATGATCCGGATTCCAAGTGGAGGTACCAAGACGAA
TGGAAATCCATCGAAGTTTTGATCTCCCACGAGACAACATCCAGATGTCTCAGGGACATCTCCTATTGTCAGACTGCAACCCGGACATCTTACACAGCCG
ACTCTTTCTCATTTGGGGATTGGTCAGCATAGTCTGCTGCAGCGCCAACACCGTCGGAATGTACCCGCCTGCAGAATCGGTCACCTTGCGGCGCACCTCC
ATCGTCTTCGTATCGACAAATTCGATATCCTGAGCAACTCGCCGATGAACCTATTCGGCTTTCCCCTCCCGATGGGAATGGGAATATTCTAGATCTGAGA
GGCAGTATGTGAACAACAAGTGACCAATGACCGTACAAGTAGATAAGCTGTACGAAGGACACAGGAGGAAGAATGAGAACTCACCTGGGAGAAAGAGAAT
ACACTTATTATGCTACGAACACATGACCCATTCCATGGCTACTTTTCAATTTCTTTTCACAAATATTGGACCTAATGCTAAAATTTAATTAAATAATTAT
TAGTTTTCCACTCATCACATTACTACACAAGGTTAAAACTTCGTCACAATTTTTACCGTTGATTACAATATCAAAATAAT