Detailed information on CNT30595582


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674416Oryza meridionalisSetaria viridis13.1220.3595.6569forward
CNT3014691Oryza meridionalisZea mays14.4526.4890.7976forward
CNT30369166Oryza meridionalisOryza glumipatula71.4872.8792.82376forward
CNT3099710Oryza meridionalisOryza rufipogon63.3152.2892.19333forward
CNT30115618Oryza meridionalisOryza nivara71.2972.2590.67375forward
CNT30603545Oryza meridionalisOryza punctata7372.8785.16384forward

Expression of CNT30595582

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTTTTTYGHTHIRTYTGTQVRSIGVSISRT*

>peptide 2 (40 aa)
YIQISDRSAIIKTGFIIFRSRIYFSYTPPPFVVIAQRRRC*

>peptide 3 (36 aa)
MSERWLIRALVVCGMVGLVLGWFYSVVCGGVVGESGS

Sequence

>CNT30595582
ATATATTCAGATCAGTGATCGATCGGCGATAATTAAGACAGGCTTTATTATATTCAGGTCACGAATTTATTTTTCATACACCCCTCCTCCGTTCGTAGTG
ATCGCACAGAGAAGAAGGTGCTAATTAGCTAAGCTCCGTGTACGCACGTACACACGCACGCACGATATACACGTAAAGCTAAGCCACCACATGACCACCA
CGACTACGTACGGGCACACACATATACGTACGTACACGGGTACACAAGTTCGATCGATCGGTGTATCGATCAGTCGGACTTGAGCAGGAAGCTCTGCTTG
CGCTCGCGGAACTCGCCGGTGCAGGTGTTGAAGTCCTCCTCCACCTTGGTCTCGCGCACCATCAGGTAGTCGTTGCCGTGGTTGTGGTTGTGGTTGTGGT
TGTGGTGGTTGTGATGAGCGAGAGATGGTTAATTAGGGCTTTGGTGGTGTGCGGGATGGTAGGGTTAGTGTTGGGGTGGTTTTATAGTGTGGTGTGTGGA
GGTGTGGTTGGGGAATCTGGTTCGTG