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Detailed information on CNT30595578


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0JR25|IBBR_ORYSJ, E-value = 1e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689957Oryza meridionalisOryza sativa30.9347.394.52219forward
CNT30574834Oryza meridionalisOryza barthii31.0725.3595220forward

Expression of CNT30595578

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSHICHCYSAARQALTLIERSARAPLLDASLLFTAGYDHQMI*

>peptide 2 (81 aa)
MHLYLGGQILSGDCFSLSQHSHGGDGHSSPAPASVGRRMLLLVVTAAEEMGIPARRRAPRVSVSRLPLFMADRLICSIYASL

>peptide 3 (32 aa)
YCVLWSPKHSLTIQIKQTQQRKKIHNKVKKHT*

>peptide 4 (33 aa)
MSLLLGSKAGVNADRAVSACAPARRVALIHRWI*

Sequence

>CNT30595578
ACTACTGCGTACTCTGGTCACCGAAACATTCCCTCACGATCCAGATAAAACAAACACAACAAAGAAAAAAAATACACAATAAAGTAAAAAAACATACGTG
ACCACACGAATGTCACACATATGTCACTGCTACTCGGCAGCAAGGCAGGCGTTAACGCTGATCGAGCGGTCAGCGCGTGCGCCCCTGCTCGACGCGTCGC
TCTTATTCACCGCTGGATATGATCATCAGATGATCTGAGGCAACGTAATTAATTAGCTAGAGTAGCTAATTAAGCTGGCTGGTTGTGACACTTGGGCCCC
GGGAAGCCGTGGTAGCGGTCGAGGCCCTCGCCGTCGCCGTCGCCGTCGCCGCCGGTGCACTTGGGGCCGGGGTTGACGCCCCAGTACCAGTCTTGGCAGA
CGTAGCCGCCGTCGACACGCTTGCAGTCCTCGCAGGCGGCGGCGCAGTGGTCGACCTCGTCCATGCACTTGTACTTGGGCGGCCAGATCCTGAGCGGGGA
CTGCTTCAGCTTGTCGCAGCACTCCCACGGCGGTGACGGCCATTCGTCGCCGGCGCCGGCGTCGGTGGGGAGGCGGATGTTGCTGTTGGTGGTGACAGCG
GCGGAGGAGATGGGGATTCCGGCGAGGAGGAGGGCTCCCAGGGTGAGCGTCAGCAGGTTGCCGCTCTTCATGGCTGATCGTTTAATTTGTTCTATATATG
CTTCCCTA