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Detailed information on CNT30595571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30574886Oryza meridionalisOryza barthii60.5656.9895.1347reverse complement
CNT30115479Oryza meridionalisOryza nivara71.5575.2395.61410reverse complement

Expression of CNT30595571

Peptides detected in this lncRNA

>peptide 1 (96 aa)
RRSAAWRARPSASRGGAGGGGGGGGGRSGASRPGGRRRSPTPSSVTSGPDGLGAQWRTRSSGHGGRLQLRAAAANPRRRRHRIRSSSNHPPHDRRR*

>peptide 2 (44 aa)
GALLRGARARPRRGAVLAVAVEEAEAAAAPRARGVVVVLRRRAR*

>peptide 3 (91 aa)
ALCCVARAPVRVAGRCWRWRWRRRRPQRRLAPGGSSSFSDAELGDFRPGRPRRAMADQEFRPRGTSPTPSGSRQSPPPAPPHPQQQQPPPS*

Sequence

>CNT30595571
CGGCGCTCTGCTGCGTGGCGCGCGCGCCCGTCCGCGTCGCGGGGCGGTGCTGGCGGTGGCGGTGGAGGAGGCGGAGGCCGCAGCGGCGCCTCGCGCCCGG
GGGGTCGTCGTCGTTCTCCGACGCCGAGCTCGGTGACTTCCGGCCCGGACGGCCTAGGCGCGCAATGGCGGACCAGGAGTTCCGGCCACGGGGGACGTCT
CCAACTCCGAGCGGCAGCCGCCAATCCCCGCCGCCGGCGCCACCGCATCCGCAGCAGCAGCAACCACCCCCCTCATGATCGGAGAAGATAGTGCAAGTTA
GTTAGCATTTTTATTTCTCCATCATTTCGCACCAATTTTGCTGCAACCATCACCAGAGCGTCCACCAAGTAGTAGGATCGATCTTTGGTTAGTGCCTAAG
CTCATGATTAGGAGAAAAAAAAAGAAGAAATGATTTTTGCCAAGGAAGAGGGCCACCCCCAATGTATCACATTAATCAAACAAGGCTAGGCTGGAAAACA
GCGGGTTAAACTGCTTACCGTTCAGAGTAATCCGTTGCTAGTCAAACATACGTGCACTTTGGGCAGTTGCGAA