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Detailed information on CNT30595568


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696470Oryza meridionalisOryza sativa48.7127.0497.35189forward
CNT30671914Oryza meridionalisSetaria viridis98.9723.0998.96384reverse complement
CNT30524650Oryza meridionalisSetaria italica98.9717.8499.22384reverse complement
CNT30378673Oryza meridionalisArabidopsis thaliana66.4920.6993.41258forward
CNT30283003Oryza meridionalisChenopodium quinoa42.5317.2893.94165forward
CNT3089926Oryza meridionalisSolanum tuberosum29.95.2496.55116forward
CNT30292784Oryza meridionalisTriticum aestivum98.9712.8198.7384reverse complement
CNT30221833Oryza meridionalisHordeum vulgare85.3124.2597.89331reverse complement
CNT30396495Oryza meridionalisTriticum turgidum98.9723.8498.96384reverse complement
CNT30555751Oryza meridionalisOryza glaberrima91.7549.9398.6356forward
CNT30147396Oryza meridionalisMedicago truncatula59.547.7693.07231reverse complement
CNT30441792Oryza meridionalisAegilops tauschii90.4656.3496.58351reverse complement
CNT30670388Oryza meridionalisTriticum dicoccoides98.9713.6998.7384reverse complement
CNT30140161Oryza meridionalisLolium perenne98.9711.2897.92384reverse complement
CNT30605073Oryza meridionalisGossypium raimondii74.4819.0193.08289forward
CNT30688989Oryza meridionalisTriticum urartu98.9719.5298.96384reverse complement
CNT30346086Oryza meridionalisEragrostis tef98.9750.6699.22384reverse complement
CNT30359771Oryza meridionalisLactuca sativa74.4827.6692.39289reverse complement
CNT3056076Oryza meridionalisAmborella trichopoda33.515.6592.31130reverse complement
CNT30106724Oryza meridionalisOryza longistaminata29.913.0599.14116reverse complement
CNT3038324Oryza meridionalisCucumis melo42.018.6493.87163forward
CNT30103741Oryza meridionalisOryza rufipogon90.9867.1196.6353forward
CNT30499372Oryza meridionalisDigitaria exilis98.9711.399.22384reverse complement
CNT30557400Oryza meridionalisPanicum hallii39.1811.0898.03152reverse complement
CNT3039925Oryza meridionalisMarchantia polymorpha20.3615.9393.6779reverse complement

Expression of CNT30595568

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKKARTEMRKEGVRQDDFGSHVKVLRKVSAGARSRSRHVHPL*

>peptide 2 (56 aa)
RVPSTWFSRRALVYSTCSPVSVWGTVSSPGGSPSQFEVFSWKFQPSLTMTTVATDY*

>peptide 3 (86 aa)
PSSFDMVLSTRPSILYLFTCVGLGYGQLTGRIALPIRSFFLEVSTVVDYDNSRDRLLRSSRLWQGRYALLSRDLYSNQKTKGPYGR*

Sequence

>CNT30595568
GCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGCTCACCGGGAGGATCGCC
CTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCGTCGTTGACTATGACAACAGTCGCGACCGACTATTAAGATCCTCGCGACTATGGCAGGGGCGGT
ACGCTCTGCTCTCTCGCGACCTCTACTCTAATCAAAAGACTAAAGGCCCCTACGGAAGATGAAAAAGGCGAGGACTGAAATGAGAAAGGAAGGAGTTCGG
CAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCGGCATGTTCACCCGCTGTGAG