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Detailed information on CNT30595566


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB2|TBB1_WHEAT, E-value = 5e-31

BLAST vs NONCODE:
NONPOPT002096, E-value = 1e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381383Oryza meridionalisManihot esculenta339.4583.13166forward
CNT30402401Oryza meridionalisBeta vulgaris32.613.885.98164forward
CNT30196370Oryza meridionalisPisum sativum30.2215.9587.5152forward
CNT30567082Oryza meridionalisActinidia chinensis3337.7386.14166forward
CNT30542792Oryza meridionalisBrassica napus31.4136.4182.91158forward
CNT30119164Oryza meridionalisCitrus clementina32.0134.5583.85161forward
CNT30330123Oryza meridionalisDioscorea rotundata33.616.686.98169forward
CNT3099786Oryza meridionalisOryza rufipogon86.6894.9998.39436forward

Expression of CNT30595566

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDVELPMKVEAMERPLGGMSQTLDFTLLGIHSTK*

>peptide 2 (40 aa)
MSSASCCSSSSYSPSSSAVASWYCCGELLAHPPEHLLDGC*

>peptide 3 (33 aa)
RLSFLVICKYCTRGSTRKGKIHPKYQQSQTSIK*

Sequence

>CNT30595566
CGATTATCATTCCTTGTAATTTGCAAATATTGCACACGAGGATCAACGCGGAAAGGTAAAATTCATCCGAAATATCAACAATCGCAGACCAGCATCAAGT
AATACAGTACCCAAAAAGGTTCCCATAGCACAGACGAAAATACAAAGCGAAGACATAGGAAGCGGGCGGTGGCGTACGAGGCGGTAATACGGTGATAATG
TAGACGGAAACACCAAGCACACGAAACCCTGCCCTAGAACCACCAAGCAAAGCCACCTTACATGTCGTCAGCCTCCTGCTGCTCCTCGTCCTCGTACTCG
CCCTCCTCATCGGCGGTGGCATCCTGGTACTGCTGCGGTGAACTGCTCGCTCACCCTCCGGAACATCTCCTGGATGGATGTTGAGTTGCCAATGAAGGTC
GAGGCCATGGAGAGGCCTCTCGGTGGAATGTCACAGACACTGGACTTCACATTGTTGGGGATCCACTCGACGAAGTAGGACGAGTTCTTGTTCTGGACAT
TGA