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Detailed information on CNT30595555


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689930Oryza meridionalisOryza sativa80.760.7396.88481forward
CNT30107081Oryza meridionalisOryza longistaminata34.917.0892.79208forward
CNT3099604Oryza meridionalisOryza rufipogon79.8751.1897.9476forward
CNT30115832Oryza meridionalisOryza nivara75.1799.1297.77448forward

Expression of CNT30595555

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LPYRSLPSPSLLRRHTNLRFPFRRHTTGSISRPSHAYAAIR*

>peptide 2 (83 aa)
YYRTGLCLPLRCCGATPIFVFPFAATPRAQSVAHPMHTLPSVEPPLLHRAPRVKSPPLAVVRGKPCCRTTWSKWFSVGVLAAP*

>peptide 3 (61 aa)
MTKNDGPIRSQFLLTAESDWPLLIAMNIQSTVSQSPALTGLNLVTKCYGSFNHSQPTDMHI*

>peptide 4 (57 aa)
TTVPVSAFPFVAAAPHQSSFSLSPPHHGLNQSPIPCIRCHPLSLLCYIAPQGSSHLH*

Sequence

>CNT30595555
TACTACCGTACCGGTCTCTGCCTTCCCCTTCGTTGCTGCGGCGCCACACCAATCTTCGTTTTCCCTTTCGCCGCCACACCACGGGCTCAATCAGTCGCCC
ATCCCATGCATACGCTGCCATCCGTTGAGCCTCCTCTGCTACATCGCGCCCCAAGGGTCAAGTCACCTCCACTAGCCGTCGTGCGGGGCAAGCCTTGCTG
CCGCACGACATGGAGTAAGTGGTTTTCCGTCGGAGTCCTTGCTGCTCCGTGATTCTGCCACCAGAGCATTCTCGAGTCCGCATATGACAAAAAATGACGG
ACCAATTCGATCGCAGTTCCTCTTGACAGCGGAAAGCGACTGGCCTCTGCTTATTGCAATGAACATACAGAGCACTGTATCACAATCGCCTGCACTGACA
GGATTAAACTTGGTTACTAAATGTTATGGTTCCTTTAATCACAGCCAACCAACGGATATGCACATATGAGGTGTGACAGAAACATCTGAGGGCCAGTTTC
AGGGGGACATATTGCCATTTCGCATTAGTTTCTCATTGTTGTGTGCATGCATAGGCAAAGGAGAAGAGTGTAGGGAAACACTAATCATTCGTTAAG