Detailed information on CNT30595547


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689864Oryza meridionalisOryza sativa27.3819.3510095forward
CNT30552241Oryza meridionalisOryza glaberrima46.9724.2995.71163reverse complement
CNT30369366Oryza meridionalisOryza glumipatula27.0918.510094forward
CNT3099836Oryza meridionalisOryza rufipogon27.3820.710095forward
CNT30574718Oryza meridionalisOryza barthii46.9738.6395.71163forward
CNT30115578Oryza meridionalisOryza nivara27.0917.1810094forward

Expression of CNT30595547

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAAADQPHGDDASSSFRCTRRRSGVRRGAVER*

>peptide 2 (38 aa)
MPPPPPPPISRTAMMRRRRSGARGGGAACGAARSRGDE*

Sequence

>CNT30595547
TTCCATTAAAACCATCACACACTAGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAACAGTAAGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCAC
GAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGCCGCCGCCGATCAGCCGCACGGCGATGA
TGCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTCGAGAGGTGATGAGTAGTTGACGCGGAACAGATATATATGGAT
GGATGGCGTCGTCGCCGGTCGGACGACGGCGAGCTCGCGCGCGTCAC