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Detailed information on CNT30595515


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552138Oryza meridionalisOryza glaberrima98.9580.9298.52946forward
CNT30110721Oryza meridionalisOryza longistaminata73.9577.7898.16707reverse complement
CNT3099916Oryza meridionalisOryza rufipogon95.481.2198.57912forward
CNT30580641Oryza meridionalisEchinochloa crusgalli13.2827.5584.25127reverse complement

Expression of CNT30595515

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIWRTVCFCNFCVKTRKLQKRCLYCSSNRI*

>peptide 2 (48 aa)
MGKLCCSQTDDDPEFNLLGLLVAVVLALLLLMLCTPPRRRRCVVYPCY*

>peptide 3 (32 aa)
MLLGWNENKSEVGLYSIVNTEQYVPDVMVYVT*

Sequence

>CNT30595515
AACCTAAAGGACATAGCCATGGAAAAGAAGTTGCATCATGGAAGGGGTAGACAGTGATGCCTCAACAACCAGCCAGCCCACATGATGCTTGAAAGCACCC
CAAGATTCATAACCAAAGTGCCATAGAATACAGAGACGAGACGACCTCCATCCGGAGTCTTTCAGAGTCTTTCAGATTCAGAAAACCCACTACTGCCAAG
AAGCCTGCTTCTCTACTACTTCCTCTCAAAGAAAGAGACCAAGAGAAGTTCATCTTGCAAGCCAAGAACTCTCGTCCTCTCCTTCTGAAGCGGGTGGCAT
GGGGAAGCTGTGTTGCAGCCAGACGGACGACGATCCGGAGTTCAACCTGCTGGGGCTGCTCGTCGCCGTCGTCCTCGCGTTGCTGCTGCTGATGCTGTGC
ACACCGCCGCGGCGCAGGCGCTGCGTGGTGTACCCCTGCTACTAATGGCGGAGGCGGCGGCGGTGCTCCGATCCTCTCAGATGAGCAGAGGGGATCGAGG
AGAAGCGAAAGGCATCGTCAAGCTTTAAAGCCAGGCATAGGTTCCGATCTTTTCTGACCGATTTGCATATGCTCAGTTTCCGAAATAATTTATGCTGAAT
TTCGAATTGTAATAGACTCGTTTCTGTTGCGAGTTGTTAGAATTTTTATGTGCATACTGTTGATTTGCGGGCTGATGGAATATATGAAATGATTTGGAGA
ACCGTGTGCTTCTGCAACTTTTGTGTAAAAACCCGGAAACTTCAGAAAAGGTGTTTGTATTGTAGTAGCAACCGTATCTGAACATCTTTCTGTTAAATCG
GTCGAAACAAGCAGAATAGGATGCTGCTGGGATGGAATGAAAACAAATCGGAGGTAGGTTTATACTCCATTGTGAATACCGAGCAATATGTACCTGATGT
AATGGTGTATGTAACATAGTACGATGTGAAGAGAATTAGAGGTGAGAGGTCAGAGG