« Back to Oryza meridionalis search


Detailed information on CNT30595512


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690702Oryza meridionalisOryza sativa99.1698.7596.62237forward
CNT30728922Oryza meridionalisCorchorus capsularis21.7619.1990.3852forward
CNT30552070Oryza meridionalisOryza glaberrima98.7498.7496.19236forward
CNT3066610Oryza meridionalisLeersia perrieri10098.7692.05239forward
CNT30369412Oryza meridionalisOryza glumipatula10098.7696.23239forward
CNT30107154Oryza meridionalisOryza longistaminata98.7498.7497.88236forward
CNT3099525Oryza meridionalisOryza rufipogon99.1698.7596.2237forward
CNT30574848Oryza meridionalisOryza barthii98.7498.7496.19236forward
CNT30115824Oryza meridionalisOryza nivara98.7498.7496.19236forward
CNT30603505Oryza meridionalisOryza punctata98.7498.7493.22236forward
CNT30551841Oryza meridionalisOryza brachyantha100.4296.7784.58240forward

Expression of CNT30595512

Peptides detected in this lncRNA

>peptide 1 (29 aa)
QAHDEVSGLSVALESPRALNRSDAAAETR*

>peptide 2 (42 aa)
MRPRRRGKSQRSRPPLREGAETRVEPYGREPRSKWPITQLFT*

Sequence

>CNT30595512
CAAGCACATGACGAAGTGAGCGGGCTCTCTGTAGCCCTGGAAAGTCCCCGGGCCCTCAACCGCAGTGATGCGGCCGCGGAGACGCGGTAAGTCTCAGCGC
TCGCGCCCTCCTCTTCGCGAGGGGGCGGAGACACGTGTGGAGCCCTATGGGCGCGAGCCGAGATCAAAATGGCCAATTACACAGTTATTCACTTGATCCA
TCTCCGGATTAACAGAACGGGGCTTACGATCGTGTGCAC