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Detailed information on CNT30595494


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690471Oryza meridionalisOryza sativa31.9680.0890.91209forward
CNT30523073Oryza meridionalisSetaria italica20.3418.5585.71133forward
CNT30552300Oryza meridionalisOryza glaberrima51.5351.2991.39337forward
CNT30455220Oryza meridionalisSaccharum spontaneum20.0317.2187.02131forward
CNT3014036Oryza meridionalisZea mays20.0324.6785.5131forward
CNT30363793Oryza meridionalisSorghum bicolor18.225.0586.55119forward
CNT30574837Oryza meridionalisOryza barthii51.2256.7891.94335forward
CNT30497518Oryza meridionalisDigitaria exilis19.8820.9785.38130forward
CNT30557683Oryza meridionalisPanicum hallii20.1836.5786.36132forward

Expression of CNT30595494

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTTTTTYGHTHIRTYTGTQVRSIGVSISRT*

>peptide 2 (36 aa)
MSERWLIRALVVCGMVGLVLGWFYSVVCGGVVGESGS

>peptide 3 (40 aa)
YIQISDRSAIIKTGFIIFRSRIYFSYTPPPFVVIAQRRRC*

Sequence

>CNT30595494
ATATATTCAGATCAGTGATCGATCGGCGATAATTAAGACAGGCTTTATTATATTCAGGTCACGAATTTATTTTTCATACACCCCTCCTCCGTTCGTAGTG
ATCGCACAGAGAAGAAGGTGCTAATTAGCTAAGCTCCGTGTACGCACGTACACACGCACGCACGATATACACGTAAAGCTAAGCCACCACATGACCACCA
CGACTACGTACGGGCACACACATATACGTACGTACACGGGTACACAAGTTCGATCGATCGGTGTATCGATCAGTCGGACTTGAGCAGGAAGCTCTGCTTG
CGCTCGCGGAACTCGCCGGTGCAGGTAGTCGTTGCCGTGGTTGTGGTTGTGGTTGTGGTTGTGGTGGTGGCGGCCGGAGCCGGACCTGTCGATCTCCTGG
AACGTCTCCTTGACGACGTGCTGCTGCTGCACGCCGCCGTGGTGGAGGAAGCCGCCGGTGGGGGTCACCGACCTCACCTCCTCCGAGCAGTAGTCCACCT
CCTGGTAGTGAGCCATTTGTTAGTGAGGTGAGGTGGTTGTGATGAGCGAGAGATGGTTAATTAGGGCTTTGGTGGTGTGCGGGATGGTAGGGTTAGTGTT
GGGGTGGTTTTATAGTGTGGTGTGTGGAGGTGTGGTTGGGGAATCTGGTTCGTG