« Back to Oryza meridionalis search


Detailed information on CNT30595467


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005024, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690246Oryza meridionalisOryza sativa50.1962.0492.42528forward
CNT30102917Oryza meridionalisOryza rufipogon50.2974.0992.25529forward
CNT30115695Oryza meridionalisOryza nivara38.541.9387.16405forward

Expression of CNT30595467

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAAELYLARLASYGRRRSRGSVVGELRVMRD*

>peptide 2 (52 aa)
SLISPLSSPRSHSGLHLSATLPLARLSPSTPRTTTHRRRSSLVNLTPPLTPG*

>peptide 3 (74 aa)
PHLTLILSQIPLRPPPFCYPAASTPLPLHSSHYHPPPALLSRQPHPSTHARLTRVATTTAPLLPRGTVWPPSSI*

Sequence

>CNT30595467
TCCCTCATCTCACCCTTATCCTCTCCCAGATCCCACTCCGGCCTCCACCTTTCTGCTACCCTGCCGCTAGCACGCCTCTCCCCCTCCACTCCTCGCACTA
CCACCCACCGCCGGCGCTCCTCTCTCGTCAACCTCACCCCTCCACTCACGCCCGGCTGACGCGAGTGGCCACGACCACCGCTCCCCTCTTGCCTCGAGGG
ACGGTATGGCCGCCGAGCTCTATCTAGCACGACTGGCGAGCTATGGGCGGCGTAGATCAAGGGGCAGTGTGGTTGGCGAGCTCCGGGTGATGCGGGATTA
GGAGGCAGTGTGGTCGGCGAGCTCCGACCGGTGCGGATCTGGGGCTGTGTGGCCGGCGAGCTCCGGGCGGCGCGGATCGTGATCGTGTGGCCGGCGAGGG
CAGTGCGGTGGAGTTGCCTCGACGGTGACGCGGTAGATCCCGATGGTGGTGCTCCTAGGTCGCCGGTTTTAGATTTAGTCTTTGAGTGATGCGGGTAATT
ATCTGCTTCTTCTAGGACTTGAACTTAATGGGGGTAAACCCCTAGTCGGTGTGCTTATGGATTGGGTAGACAAGCTTCCGTTGTTCTAATATTTATTTGG
CCGGTCAGCCAGTGTAACTAAAGTAGATGTAGTTTATAATCACTTTTATCTTATTTGTGTTTGCTATGTATAACCATGCTTGAGATGAAAGTGTGAATCT
AGTGCACATCCTGAGAACTAGATTCGCATGAGTATGAGTTAGGAATATTTGAGATGTTGTAGATCTTTAGCCTTTTTGTCAAGTCTCCTAAATGTGTAAC
ACATCTGGTCGCCGCCTTCGAGTGGTTTGACGGGCACATCTCAGGCTGAAGTTAAATGGCAGGCTAAAGGCCCAACAATATCTCCAATATTCCTCTCTCA
AGGCGTCGGATATTTCATTATACTTATTTGGTGACTTAAATTATTCACTTTATCTCCTAATTATAATAGAAGGTCCGGAGAGCCTACGACAAATGCAGTG
CCCCCGTCATTCTCTCCACGCCGCACGCCCTCGATGGAGGCGAAGTCTAGTG