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Detailed information on CNT30595465


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000177, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552286Oryza meridionalisOryza glaberrima95.6483.4695.26570forward
CNT3066724Oryza meridionalisLeersia perrieri21.8144.5288.46130reverse complement
CNT30369297Oryza meridionalisOryza glumipatula94.6390.195.21564forward
CNT30106043Oryza meridionalisOryza longistaminata48.3281.1396.18288forward
CNT3099917Oryza meridionalisOryza rufipogon95.1383.0295.24567forward
CNT30574627Oryza meridionalisOryza barthii95.1397.0995.24567forward
CNT30115788Oryza meridionalisOryza nivara96.1489.2594.42573forward

Expression of CNT30595465

Peptides detected in this lncRNA

>peptide 1 (89 aa)
LLIISVGETGHCGYKHRRTNKYNRQRTEAGRRGLDRRNMDPAERVVKAAWYKGAVVTHRPKPVSPIVNQSKNKNKQAKKPKPATPSKKL*

Sequence

>CNT30595465
CCTCCTAATAATATCAGTAGGAGAAACAGGCCATTGTGGATACAAGCACAGAAGAACAAATAAATATAATCGACAGAGAACTGAAGCCGGCCGACGAGGT
CTCGACAGGCGAAATATGGATCCTGCAGAGAGGGTGGTGAAGGCGGCATGGTACAAGGGCGCTGTCGTCACTCATAGGCCGAAGCCTGTTTCCCCTATCG
TTAACCAGAGCAAGAACAAGAACAAGCAAGCCAAGAAGCCCAAACCAGCTACACCCAGCAAGAAGTTATAAACTTAACTGGCTGCCTGCCTCTACTACAC
AGTATGTATGCAAACCGAAAGACTGGCTAATTAGGGGGTTTAATCTTCAGGATTCAGTTCAGGTGTGAGCTGAACACTGAAGAAGTGAAGAGTATACTTG
GATACAGTTAATTTTACCTGTTCAAACTTCAAACGGTCCTACAGGATGCCGGATTATGCATGTTGTAAGAATAAAATGCTTGAGATACCTACTCTGTGAT
GTTCATATTGACCTCCTGGTTGAAATTTGGGAATAAATTGTTTCTGGAAACAAAGGCATTATTTGATGAATCGTAGATTCGTAGTGCTTAATGAAC