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Detailed information on CNT30595455


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000279, E-value = 8e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696308Oryza meridionalisOryza sativa39.0229.794.6352forward
CNT30552380Oryza meridionalisOryza glaberrima23.9514.394.44216forward
CNT30110178Oryza meridionalisOryza longistaminata23.9511.494.91216reverse complement
CNT3099989Oryza meridionalisOryza rufipogon23.9513.9494.91216forward
CNT30574808Oryza meridionalisOryza barthii23.9515.6194.44216forward
CNT30116834Oryza meridionalisOryza nivara34.2613.8695.15309forward

Expression of CNT30595455

Peptides detected in this lncRNA

>peptide 1 (59 aa)
NTTHLAHLVHHLPLLSLSRSLSFSLALPCAAASSGLAAAPPHARRCSLPPAAAPQPLPA*

>peptide 2 (67 aa)
KHNALSPLSPPSSSSLPFSFSFFFSRSPLRRRILRSRRRSTPRPPLLPASGSRPAAAAGLNRFRGSS*

Sequence

>CNT30595455
TAAACACAACGCACTTAGCCCACTTAGTCCACCATCTTCCTCTTCTCTCCCTTTCTCGTTCTCTTTCTTTTTCTCTCGCTCTCCCCTGCGCCGCCGCATC
CTCAGGTCTCGCCGCCGCTCCACCCCACGCCCGCCGCTGCTCCCTGCCTCCGGCAGCCGCCCCGCAGCCGCTGCCGGCCTGAATCGGTTCCGTGGCTCCT
CATGAGTCTGACCCCAAGCTAAACCTAACTTCCAACCTCCTCATCCCTAGATGCAGCCACCGGCAAAACTCCGGCGAGCTGCTCCTCTGGATTCTGATTC
AAGGATTCTCCTGATGGAACTCTAATTTCTCCTCTTTAAACTCGGGCACCTCCAGATTGATTTGTACTATGGCATACTAATCCTGGAACTAAAGCCCCTT
TCTTTACTTGAAACTCAGGTGAACTACTGTGACTAGGTGACTCACCTGCTTTAGTTTGGTGGCTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGG
TGGGGTAATGTGGAATTTTACTAAATTTTTCTAGTTAGATAAATTCTGATAAAATGAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCTAAAATTGAAG
GATACTCTGAGATTAGGGACTGATTTGTAATTGTTCTAGAACTCATAGTCAGTTTTGCAAGGTTACCAATTCTCCATATATTTTTGGTAGATAAATTTGT
GCTTCTATATGATTTAGCCGTGCATCTATTTGCTTGCTGGGATTAAAATAATTTGCTCTAGTTTTATTTTCATTTTCTCAATTCCTCTATTGATTTCTAT
ATAATAGTTATGAGTTGAGTATGTTACAGAACATGTGCAAAGCATAATATGGATGTATGCATGCATGTATGCAGATATACACTGATCATTTGTGAATAAA
GT