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Detailed information on CNT30595409


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-153

BLAST vs NONCODE:
NONTPRT002153, E-value = 8e-127

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727318Eragrostis curvulaCorchorus capsularis74.2359.0783.23674forward
CNT30406246Eragrostis curvulaBeta vulgaris72.5898.2183.92659forward
CNT30200687Eragrostis curvulaPisum sativum66.9692.484.7608forward
CNT3096888Eragrostis curvulaSolanum tuberosum73.5766.9383.23668forward
CNT3061706Eragrostis curvulaArabidopsis lyrata69.2768.6783.78629forward
CNT30572920Eragrostis curvulaVitis vinifera67.9563.6185.41617forward
CNT3031515Eragrostis curvulaTheobroma cacao74.2372.6383.23674forward
CNT30603724Eragrostis curvulaOryza punctata74.5662.5187.44677forward

Expression of CNT30595409

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLGPQGHLIIISSHHVKCNHGTDSVAKTC*

>peptide 2 (79 aa)
MKSGFLLDVVIGQGTPILQLLPSKDKPLLIWRNSLLVLNLGLHIIDGVRALHLKCDGLACQCLDKDLHPSPKAQDKMKS*

>peptide 3 (61 aa)
MSRCWSGGMPSLSWILAFTLSIVSELSTSRVMVFPVRVFTKICMPPLRRRTRWRVDSFWML*

>peptide 4 (59 aa)
SDEGNQTADVSKASSCSFNYLLQSERNQNPLKNSLHNVTRPPGTSYHNFITPRKVQSRY*

>peptide 5 (31 aa)
MVSELSTSSVMVLPVSVLTKICIPPLRRKTR*

Sequence

>CNT30595409
CATCAGACGAGGGAAATCAAACAGCAGATGTAAGCAAAGCTAGTAGTTGCAGCTTCAACTATTTATTACAGAGCGAAAGAAACCAGAATCCTTTGAAGAA
CAGTTTACACAATGTTACTAGGCCCCCAGGGACATCTTATCATAATTTCATCACACCACGTAAAGTGCAATCACGGTACTGATTCGGTAGCTAAGACTTG
CTGATCGATCCTTCACAGCTAGCACCCACCCCCGCGGAGGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTACGCCCA
TCCTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTCACATTATCGATGGTGTCAGAGC
TCTCCACCTCAAGTGTGATGGTCTTGCCTGTCAGTGTCTTGACAAAGATCTGCATCCCTCCCCTAAGGCGCAAGACAAGATGAAGAGTTGACTCCTTCTG
GATATTGTAGTCAGCCAATGTGCGCCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTG
GCCTTCACATTGTCTATCGTGTCAGAGCTCTCAACCTCAAGAGTTATGGTCTTTCCAGTGAGGGTCTTCACAAAGATTTGCATGCCACCCCTCAGACGAA
GGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAATGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGG
GGGAATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATAGTATCAGAACTCTCAACCTCGAGAGTGATGGTCTTGCCGGTCAGGGTCTTAACG
AAGATCTG