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Detailed information on CNT3059458


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4H7|EF1A2_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525464Arabidopsis lyrataPhaseolus vulgaris45.54101.2480.42572forward
CNT3074067Arabidopsis lyrataBrassica juncea75.893.791.81952forward
CNT30449969Arabidopsis lyrataSaccharum spontaneum7574.6485.77942forward
CNT30594462Arabidopsis lyrataEragrostis curvula75.481.3687.01947forward

Expression of CNT3059458

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MGVHFAPFLTAALVTLAPVGSFLSTLLMTPTATVCLMSLTAKRPSGGYSEKVSTTMGLVGVILTIPASPFFKNLGSFSISLPERLSILVKISENLTAM*

>peptide 2 (41 aa)
MLSPSNPEMGTNGILSGLVDLSIMLSPSNPEMGTNGILSGL*

>peptide 3 (93 aa)
MMMTWEVKLAAPLAGSSFELEATYPLLRSFTATFLTLNPTLSPGSASRRDSWCISTDLTSVVNPVGAKVTTIPGLIIPVSTRPTGTVPIPPIL*

Sequence

>CNT3059458
TGAGAGATTAAATTCAAAAGTGACACAACAGGAAAATGATAATATCCGGGGGAATGTGACAACATAACGAATCTCCAAAAAGGTTCAAAATCGAAAACAA
TTCAAAAAGCAAAAAACAGACAGCTTGAGTGCCAAGTGGCCCCGCCACCTCCGATCAAGAACCCAGTTCCGGGAATTGAGCTCTGACGGAGAAGAAACGA
AGCTGTAACACATACAAGCGACCAAATACAAAACTAAAGTGAAAACCCTAAAACAGTCGTTTGATTCATCTGCGGATAGAGTTTTGAGGATGGGAGTTCA
CTTCGCACCCTTCTTGACGGCAGCCTTGGTAACCTTGGCTCCAGTTGGGTCCTTCTTGTCAACACTCTTGATGACACCAACAGCAACAGTCTGCCTCATG
TCCCTCACGGCAAAACGTCCTAGTGGTGGGTACTCAGAGAAGGTCTCCACAACCATGGGCTTGGTCGGAGTCATCTTAACCATACCGGCATCCCCATTCT
TCAAAAACTTGGGCTCCTTCTCAATCTCCTTACCAGAACGCCTGTCAATCTTGGTCAAGATCTCAGAGAACTTGACTGCAATGTGAGAGGTGTGGCAATC
GAGGACAGGGGCGTAACCGTTACCAATCTGACCAGGGTGGTTCATGATGATGACCTGGGAGGTGAAGTTGGCTGCTCCCTTGGCAGGGTCATCCTTTGAG
TTGGAGGCGACGTACCCTCTCTTAAGATCCTTCACGGCAACATTCTTAACATTGAACCCAACATTGTCACCGGGAAGTGCCTCAAGAAGAGACTCGTGGT
GCATCTCAACAGACTTGACCTCAGTGGTCAACCCTGTGGGAGCAAAGGTCACGACCATACCAGGCTTGATCATACCAGTCTCAACACGTCCCACTGGCAC
CGTTCCAATACCACCAATCTTGTAGACATCCTGAAGTGGGAGACGAAGGGGCTTGTCTGATGGCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGG
AGAGTTGGTCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCTCCCTCGAATCCAGAGATGGGCACAAACGGGATTTTGTCGGGGTTGG
TGGACCTCTCAATCATGTTGTCTCCCTCGAATCCAGAGATGGGCACAAACGGGATTTTGTCGGGGTTGTAACCAACCTTCTTCAAGTAGGAAGACACCTC
CTTGATGATTTCATCGTACCTGGCCTTGGAGTACCTGGGGGTGGTGGCATCCATCT