Detailed information on CNT30594208


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SLN8|DBR_TOBAC, E-value = 4e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692910Eragrostis curvulaOryza sativa37.372.8883.81105forward
CNT30377811Eragrostis curvulaArabidopsis thaliana39.1527.0381.82110forward
CNT30186563Eragrostis curvulaSecale cereale92.1737.6579.92259forward
CNT30150700Eragrostis curvulaBrachypodium distachyon57.6536.1679.63162forward
CNT30101185Eragrostis curvulaOryza rufipogon37.3716.7583.81105forward

Expression of CNT30594208

Peptides detected in this lncRNA

>peptide 1 (39 aa)
LNVIDLPLLQVPHHLLLKLAVLAEVVHDNKPLHAQALGN*

>peptide 2 (58 aa)
MTINPSMRKRLAIRQKRLRVPSGCSLLYCEIIPQTGIRPRKRMLRSTASSIAPPTFSK*

Sequence

>CNT30594208
CCTCAACGTAATTGATCTTCCCCTCCTTCAGGTACCTCACCATCTCCTCCTCAAACTGGCGGTACTCGCCGAAGTGGTCCATGACAATAAACCCCTCCAT
GCGCAAGCGCTTGGCAATTAGACAGAAGAGGTTGCGAGTACCCTCCGGTTGCTCCTTGTTGTACTGTGAGATCATCCCACAGACTGGGATTCGACCGCGC
AAACGCATGTTGAGAAGCACGGCATCCAGCATTGCGCCTCCCACGTTCTCAAAATAGATGTCAATGCCCTCAGGAAAGTAC