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Detailed information on CNT30593848


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-151

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-122

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519947Eragrostis curvulaSetaria italica76.3578.187.96681forward
CNT30242486Eragrostis curvulaAvena sativa77.4767.0292.62691forward
CNT30142093Eragrostis curvulaLolium perenne77.4772.2892.19691forward
CNT30722025Eragrostis curvulaTriticum spelta74.5575.0691.28665forward
CNT30100520Eragrostis curvulaOryza rufipogon77.1369.3587.79688forward
CNT30583253Eragrostis curvulaEchinochloa crusgalli77.4732.6190.45691forward

Expression of CNT30593848

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPSLSWIFAFTLSMVSEDSTSRVMVLPVRVLTKICIPPRRRSTR*

>peptide 2 (43 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICI

>peptide 3 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSDDSTSRVMVFPVRVFTKICIPPLSLSTRWRVDSFWML*

Sequence

>CNT30593848
CAAACCAAGTTTAGGTTCACTTATTCATCACAGATAAACTGAGCTGCTGCCAAAGCAAATGTTTCACAAACACAACCAAGAAGACACAAGACTGAAATAA
CAGACATCATTCGACCGACACACGAACTAGACACACCCATCACCACCATTGGGGAAACATCATACTAAACCAGGGACCACAGAAGCTCCTGGCCAAGGAC
CTACTGGCCACCACGGAGACGAAGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCCGCCAGGGTACGTCCATCCTCCAGCTGCTTGCCAGCA
AAGATAAGACGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCCAGGGTGATGG
TCTTACCAGTCAGGGTCTTGACAAAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCAAGGGT
GCGACCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTG
TCAGATGACTCAACCTCCAGGGTTATGGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCATACCACCCCTGAGCCTGAGCACCAGGTGGAGGGTGGACT
CCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG
GATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATCTGCATCT