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Detailed information on CNT30592666


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403755Musa acuminataBeta vulgaris15.0122.2987.67146reverse complement
CNT30223386Musa acuminataHordeum vulgare35.1533.587.43342forward
CNT30171414Musa acuminataTrifolium pratense7.520.9890.4173reverse complement
CNT30439298Musa acuminataAegilops tauschii35.1535.5188.01342forward
CNT30655399Musa acuminataRosa chinensis35.1542.5985.09342reverse complement
CNT30207123Musa acuminataHelianthus annuus7.9130.0896.177reverse complement
CNT30683092Musa acuminataTriticum urartu20.869.1891.13203forward
CNT30720485Musa acuminataTriticum spelta6.4720.0690.4863forward
CNT30104537Musa acuminataOryza rufipogon12.3339.3491.67120reverse complement
CNT30575481Musa acuminataOryza barthii15.4227.9391.33150forward

Expression of CNT30592666

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTSRTHLLILRAPLAMMWWLTSNSNSVLSEPCGKVSHHTAHKLDLSRNLIKELS*

>peptide 2 (30 aa)
MQGAVLALPNQRRAPTPVAFVIGLLNFVSI*

>peptide 3 (33 aa)
TVGLSNTESEVNDESDPSANPASSPCYDVVVNL*

Sequence

>CNT30592666
CTACGGTCGGGCTATCGAACACAGAGTCAGAAGTGAATGACGAGTCGGACCCATCTGCTAATCCTGCGAGCTCCCCTTGCTATGATGTGGTGGTTAACCT
CTAATTCGAATTCAGTGCTCTCCGAACCGTGCGGGAAGGTTTCCCATCACACGGCTCACAAACTTGATCTTAGCAGGAACCTTATTAAAGAACTATCTTA
GCAGGAACCTTATTAAAGAACTGGCCTGGAAAATCCCTTTGCTACTCAAGTGTACGGCGGATGCCGTGCTTAGGCCCCTTCTTCCCTTTGACCTAATCCA
ATTGTTGAGTCCTGCCTGCCTGAAACTTATTGGTATAGTAGGTATGGAACTTATTGGTATAGTGGGTATGGCGTGTAGACTAGCCCCCTTTTGCATTATA
GGTGATTTACTACCGAAGCGAAGATTATAGGTTCATTTACTACCGAAGCGAAGAAAAGGCTGGATCAAGAGAAAAGGGAGTACTACGAGCCCTCTGCCCC
ACGCATATAACCTGCTCGCGTGGTTCACCGGTTCCACCGACTTAAACCCTTAGATAGAGTTCATTTCCGTCGATACAGAGGTGCGCTTTAAGTGTGGGGG
TGTGCTGTCCCTATTGGGCTGGGACCTTTCCCAGAAGGCCCTAAAGTGAAGGGGCATAAGCGCCCTCTTGCAACCCCTATGCAAGGCGCCGTCTTAGCCT
TACCAAATCAAAGAAGAGCTCCCACACCTGTAGCGTTCGTGATCGGACTCCTCAACTTTGTATCGATCTAAAGGCTGGGCTAAAGCCCTGGGAGTTTTAC
GTCAAGTATGTACCCCCTCGATTCCCGACATGCTATTTCCAATGAGATCCAGGGAGATATTCTGATATAACAAGCACTAGCTCCCGGTGCTACTTCATAA
AATGCAATCAAAGAGAAGATTGATGATAATGAAACTAGAGTTGTAGTAATTATGGCGGTTCCTTCAGAGCCTA