Detailed information on CNT30592653


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01300|NU1M_PETHY, E-value = 2e-45

BLAST vs NONCODE:
NONATHT001124, E-value = 2e-98

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269710Musa acuminataChenopodium quinoa8.6849.5293.75208forward
CNT30162048Musa acuminataPistacia vera5.0944.291.8122reverse complement
CNT3098426Musa acuminataSolanum tuberosum9.0525.6591.71217reverse complement
CNT30226250Musa acuminataHordeum vulgare11.8921.6192.28285forward
CNT30683484Musa acuminataTriticum urartu11.8960.5192.63285forward
CNT30100822Musa acuminataOryza rufipogon9.5588.7691.27229forward
CNT30578173Musa acuminataOryza barthii29.2420.6586.59701forward
CNT30115142Musa acuminataEutrema salsugineum3.5520.8894.1285reverse complement

Expression of CNT30592653

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIEARKLSGQVPLIDHNDIVEMLHGPIYKGKEKDSPLY*

>peptide 2 (34 aa)
MCLEMAVCLLSPCWWGIRSGVVALLHLARPLGTF*

>peptide 3 (72 aa)
MVVGAQDRYSLQLKLVPYYYLSSTLINKTLSERLILPLFLKRALFLKRVITVFSQYVFFETDELSRFHHGTL*

>peptide 4 (88 aa)
MLGWYQLGWEQTFMSSGKTRTTLLVVWVNKNDSSGSLGKTRTSLLACLLICMLCVRVVLPLRSHYYPSVDWASVWLGWRRGEASSMAT*

Sequence

>CNT30592653
GATAGTTGTTAGCAAGCTCCTTTGAAAGCATCTTGGGATGGACTAACAGCTTGAAGGGAAAGGGTAGGAGCTAGGTAAGAAAGGGACAGACTAACAGCTT
TCAAGAAAGGAAAGGGTAGGAGCTAGGAAAGAAAGAAGGACTAATCATAACATAAAGAATATAGCGATCTTTCAAACAGGACTGCCCAATAGGTGTACAT
TAATTGGATACTTCAATCTTTCCTTAGCGCTTAAAAAGAATATGAGCTACAACTAAAATCAGAGAGGAGCATTCATCTATCCGATTCAAATAAGAGAGGA
GCATTCATCTAACCAATAAGAGAATCAATGGATGTACAGACTTCCTATCTCGGACCTAAAACATTTCTAGACTGCTACTGCACCAACATCATCTAAAACC
TTCTTTACTTACAGCTTGCCGACGTAATATTTACTAGAGTGCGACCAGCTAACCACGCCCTAACGTTTTGATGCTGGGTTGGTATCAGCTGGGTTGGGAA
CAGACCTTTATGAGTTCGGGTAAAACAAGAACGACTCTTCTGGTAGTTTGGGTAAACAAGAACGACTCTTCTGGTAGTTTGGGTAAAACAAGAACGTCAC
TTCTGGCGTGTCTGTTGATTTGTATGTTGTGTGTTCGGGTAGTGCTTCCACTGCGAAGTCATTATTACCCTTCGGTAGATTGGGCGTCGGTCTGGCTTGG
ATGGAGACGGGGTGAGGCGTCGTCAATGGCTACTTGATTTTGCTTCCTCTTCCTCAGCGCTCTCTTCATATGGTCGTCGGCGCACAGGATCGGTATTCGC
TGCAGCTCAAACTAGTTCCATACTATTATTTATCATCGACCCTAATCAACAAAACCTTGAGTGAGAGACTTATATTGCCTTTATTTCTTAAGAGGGCTTT
ATTTCTTAAGAGGGTAATTACGGTCTTCTCTCAATACGTGTTTTTCGAGACAGATGAATTGAGCCGCTTTCATCATGGCACACTATAGAATAAGGTACTG
CCAGATTCGCTGAGCTCTTCTCTTTCATTAGCCTTTTGATTTACACTAGCTCTTATTCTAGTTTGTTTTAATATTATATCTTCTAGGTGGTAGGCACATA
TCATAGGTATTGGATGTATCGTTAGTTTGTGCCGAGTTGAATCTGCTTCGCTTATTTTGATCCGTAGCAGAAAATAGATCCCTTACCACCACTTGACTAA
ATTCTGCATATTAATATGTAAGTCTAGAAGACAGCAGATACTATGGATCCTCTGACTCCCAATCAGATTGCCTTCCCGGGTATCGCCGGTCTTGCCTGTA
GGTCGTGATGTGCCTCGAGATGGCCGTCTGTCTCCTGTCTCCCTGCTGGTGGGGAATCCGCTCCGGGGTCGTTGCTCTGCTGCATCTGGCCCGTCCTCTA
GGCACCTTTTGAAGGCAGGGAGTGTTACAACGTACACGCTTCCTTGGTGCTTCTCATCAGTTGCAGGGTTTGGTGGCCCGAAATAGACTTGGCTTCGCCA
AAAGGCCTCATCTCCAAAGCCCGACTCGCAAGGCTGTAAGGTGCTAAGAGCCTCTCGCCTCGCTCTTGTTACATGCTATGTTTGCCTTCTTCATTACCAA
GTAAAGGGTGAGTCCCATGCTATAGTTTGTGGATCTCGGTCTCACGCACTAATCCCTACAGGTTTCCATAGTATGCCGGCCGCCCTACCTAAACCAATCA
TCATATCGGTCCCTAAGCCCCATTGCTAGAAAGGCTCGGCTTCAAAACCGTACGTGGAGCTTCCGCCTCATACGGCTCCTCTAGGGATGTGGGTAGGCCC
AGGCTTGTGCGGTTCAGGTTTGTTGTACACGACCTAAGTTTAGCATTCAGTAAGATACAGCGCAGGTTCGCCAGAGGAAAGGGTGTAGCGAGCAACATTG
CACAAACCAGAGCACTATTCTTGTCTACCAGAGCACTATTCTTGTCTATAAATTCATTAAGCTGACCACGTTACTGATAACCGCTTCACGAGCACTATTA
TTGTCTATAAATTCATTAAGCTAGAAATTCATTAAGCTGACCACGTTACTGATAACCGCTGAACGAGCAATTACTCCCCAACTTCCAAAATGAAACCTAG
AAACTTCCTGGCACATACATTAAGGAAGCCATCGAAAGGTTACTAAAACACCAGAAACGGAGACTACCCGAGCTAATGATAGAGGCAAGAAAACTTTCCG
GCCAAGTCCCATTAATTGATCATAACGATATCGTGGAAATGCTGCACGGACCCATATATAAAGGAAAAGAAAAAGATTCACCTTTATACTAAACCAGATC
GAGCCCGGGATCTTATTGGAAATTGGAAGATCTAGGATAGGCGGCCAACCTCCTGGAAAGAGCAATGTGCATGGACCGGGTGATAGTCTCATATTGG