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Detailed information on CNT30592620


BLAST search results

BLAST vs Swiss-Prot:
sp|P08977|RT13_MAIZE, E-value = 6e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187493Musa acuminataSecale cereale18.6593.3991.75424forward
CNT30401101Musa acuminataTriticum turgidum19.2235.9191.76437forward
CNT30437037Musa acuminataAegilops tauschii11.3574.5796.12258forward
CNT30664530Musa acuminataTriticum dicoccoides15.799.7291.88357forward
CNT30598800Musa acuminataFraxinus excelsior10.7765.8695.51245forward
CNT30228621Musa acuminataAnanas comosus12.8470.1989.04292reverse complement
CNT30210312Musa acuminataHelianthus annuus9.8986.2193.33225forward
CNT30685635Musa acuminataTriticum urartu16.6239.2591.8378forward
CNT30480890Musa acuminataArabidopsis halleri10.7773.5795.92245forward
CNT30557320Musa acuminataPanicum hallii18.2193.2491.06414forward
CNT30335348Musa acuminataCynara cardunculus10.264.0993.97232forward

Expression of CNT30592620

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPQRKENEKTMNRTSTSSLTPPRLRLYTPTSSGPGSSRISS*

>peptide 2 (70 aa)
MRFQVLQHRESYFFDSSIDLRKDWKVSLYLCIGEKEPSPPFSYYICEKRIGSFRKNHFNQIDSQRNIRKS*

>peptide 3 (50 aa)
SGRSNGARFVSARRGIRNITNTGNKGIPDHICFCAMTISLELQGPTHISA*

Sequence

>CNT30592620
CTTCTGGGAGATCAAACGGAGCTCGATTCGTTTCTGCTAGACGAGGAATAAGGAACATAACCAATACGGGGAACAAGGGAATACCAGACCATATCTGCTT
TTGCGCCATGACAATCTCACTCGAATTACAGGGACCTACACATATTAGCGCATAATAAGAATCAGACCAATAGAGACTTCATAAGGGACCATTTGAGCTG
CAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGAAGTTCCCAACAATGCCACAAAGAAAAGAGAATGAGAAAACTATGAACCGTACGAGC
ACGTCCTCTCTCACCCCACCGCGCTTACGGCTCTATACCCCAACTAGCTCTGGCCCCGGGTCCTCCCGCATCTCTTCCTAGGTAAGTAGACCGTGGAAGC
TGGGGTGTATCCGCTTGCGACAGATAGAAAGCTGCAAGCATATCCATGGTTGATACCTAAAGCCTATATAAAAGAAGCTCTGCCTAACAAATAAGTTGAT
ACCTAAAGCCTATATAAAAGAAGCTCTGCCTAACAAATCCAAATAGTGGACGCGTCAGAGACATCTTTATCAGAAGAGGAGGCTTCGTCCTCCGGCTACT
CATAAATGATTATAGGATCGGCCGGCTCATCCTCGGAATCCAACAAAGATGGAAGAGAAAGAGAAATAACATATTAGGTGAAATTACATAGCGAATCAGA
CAGAATAGGATGTAGAAGAAAGAAGAATCAAGAGAAAGAAGGTATTGGAATGGGCTAGGAAGCTACCGTTTAACGAAAAGCAATGCTACAAGCAAGGTAG
CGACTCTCTGTCTAGCGTGTGGGGGGGGCATTGGAAAGACTAGACCATACTCATTAGTACAATAGGCATTCGGGAAGCGCCTAGTCGTTTATTTCTGACG
AAGCTTAACGAAGGCCGACTACTTACTACATAGAGACAACTACCAGTCATGAGCGATAGTGAAGCCTAGAGAGTAGGAAACAGTCGCTTGACGGACGCGA
TAGGCGGGCGAAGTGAGCGATACCAAGCCGAGCCACTAGTTTATTGGGTGCCTACATTACATATATGGAAGAAGTCATAGGTTAAACACATCGAACGAAA
CAAAACGGAAAGTGAACTATTGAACAGTGTGATTGATAAGAACAGTACTAGCTCATCACTCGCCTAGCAACTGTAGTAGTAGCTTGGCCGGGGATCTTCT
TTCATTGAATAATTCGCTTGCGAGAAGTCCTAGCATTAGTATGAGTTCGTTGACCGCGTAAGGGCGATCCATCTTGATGACGAATTCCACGATAACGAGA
AATAGAAATTAATCGTTTGATGTCTGCTCGTTCTCCCCTCTTCAATTCCCAATTCACAACATGATCTTGACTTATCATTTGTTCCATTTGGTCGATCTGA
TACTTAGTTAACTCCTGAATCTTGATGTTCCCACTGATACCTAATCGATAACGAAACTTCATGGCTTTTTGAGGTCCAATTCCATCCATTTTGGTTGAGG
CTATTCTGACTTGTTCATCGGGAACTGATATAGCTCCATTATTATCTGACATTATTAATCCTTATACCTTTTCCTGGTCTTCTCGGCTGGAATCTACAAG
GGGTCTCCATCCCTCCACTCACGAACAAAGCTAGCCATTTCTCTTGACTAGAGAAAGATCATAGCAGAGATTACCCATACCCGAAAGAGCATAGCAGAGA
TTACCCATACATACCCTATAAGTAAGAGACTATATTATTACCCATACATACCCTATAAGTAAGAGACTATATGCGCTTTCAAGTACTCCAACATAGAGAG
AGCTATTTCTTTGATTCTTCTATTGATCTCAGAAAAGATTGGAAAGTGTCCCTATACTTATGTATAGGCGAGAAGGAGCCCAGCCCGCCTTTCTCTTACT
ATATCTGTGAAAAGAGAATAGGTAGTTTCAGAAAGAATCATTTCAATCAAATTGATAGTCAGAGGAATATTCGAAAATCCTGAGGGGAAGAACGTAGATT
CATTCCATTCTCTCACACACTATCGCTATTCTCCTCTCCATTCTCTCACTCACTATCGCTATTCTCCTATAAGAAAGACACTGTTGCAGCAATCGGTTGA
AGCATTAGTTCCCGGTTAGTGGGTGCTGGGGACAGACTTGACGTAACAACTCCATGGGGGCCGCCATGCCTTTAGATCGATACACTGTTTAGGAGGCCAG
GCCGATCACGAACGCTACTGGTGTGGGCTGCTATCAGAGATGATTCAAGAAAGCCAACAAGAATAGGGCCAAGC