CANTATAdb - search

Detailed information on CNT30592619

BLAST search results

BLAST vs Swiss-Prot:
sp|P08977|RT13_MAIZE, E-value = 7e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3098190	Musa acuminata	Solanum tuberosum	9.54	42.47	85	220	forward
CNT30223773	Musa acuminata	Hordeum vulgare	6.46	26.14	83.22	149	forward
CNT30354619	Musa acuminata	Lactuca sativa	16.64	23.05	90.1	384	forward
CNT3056169	Musa acuminata	Amborella trichopoda	6.11	38.74	90.78	141	forward
CNT30104330	Musa acuminata	Oryza rufipogon	10.58	28.5	88.93	244	forward

Expression of CNT30592619

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPQRKENEKTMNRTSTSSLTPPRLRLYTPTSSGPGSSRISS*

>peptide 2 (42 aa)
MEWARKRKKVLEWARKLPFNEKQCYKQGSDSLSSVWGGHWKD*

>peptide 3 (57 aa)
SGRSNGARFVSARRGIRNITNTGNKGIPDHICFCAMTISLELQGPTHISTVYRESDQ*

>peptide 4 (70 aa)
MRFQVLQHRESYFFDSSIDLRKDWKVSLYLCIGEKEPSPPFSYYICEKRIGSFRKNHFNQIDSQRNIRKS*

Sequence

>CNT30592619
CTTCTGGGAGATCAAACGGAGCTCGATTCGTTTCTGCTAGACGAGGAATAAGGAACATAACCAATACGGGGAACAAGGGAATACCAGACCATATCTGCTT
TTGCGCCATGACAATCTCACTCGAATTACAGGGACCTACACATATTAGTACAGTATACCGGGAATCAGACCAATAGAGACTTCATAAGGGACCATTTGAG
CTGCAGATCGTAATGCTCCTAGAAAGGCATATTTCGAATATAGAGGAAGTTCCCAACAATGCCACAAAGAAAAGAGAATGAGAAAACTATGAACCGTACG
AGCACGTCCTCTCTCACCCCACCGCGCTTACGGCTCTATACCCCAACTAGCTCTGGCCCCGGGTCCTCCCGCATCTCTTCCTAGGTAAGTAGACCGTGGA
AGCTGGGGTGTATCCGCTTGCGACAGATAGAAAGCTGCAAGCATATCCATGGTTGATACCTAAAGCCTATATAAAAGAAGCTCTGCCTAACAAATAAGTT
GATACCTAAAGCCTATATAAAAGAAGCTCTGCCTAACAAATCCAAATAGTGGACGCGTCAGAGACATCTTTATCAGAAGAGGAGGCTTCGTCCTCCGGCT
ACTCATAAATGATTATAGGATCGGCCGGCTCATCCTCGGAATCCAACAAAGATGGAAGAGAAAGAGAAATAACATATTAGGTGAAATTACATAGCGAATC
AGACAGAATAGGATGTAGAAGAAAGAAGAATCAAGAGAAAGAAGGTAATGGAATGGGCTAGGAAGAGAAAGAAGGTATTGGAATGGGCTAGGAAGCTACC
GTTTAACGAAAAGCAATGCTACAAGCAAGGTAGCGACTCTCTGTCTAGCGTGTGGGGGGGGCATTGGAAAGACTAGACCATACTCATTAGTACAATAGGC
ATTCGGGAAGCGCCTAGTCGTTTATTTCTGACGAAGCTTAACGAAGGCCGACTACTTACTACATAGAGACAACTACCAGTCATGAGCGATAGTGAAGCCT
AGAGAGTAGGAAACAGTCGCTTGACGGACGCGATAGGCGGGCGAAGTGAGCGATACCAAGCCGAGCCACTAGTTTATTGGGTGCCTACATTACATATATG
GAAGAAGTCATAGGTTAAACACATCGAACGAAACAAAACGGAAAGTGAACTATTGAACAGTGTGATTGATAAGAACAGTACTAGCTCATCACTCGCCTAG
CAACTGTAGTAGTAGCTTGGCCGGGGATCTTCTTTCATTGAATAATTCGCTTGCGAGAAGTCCTAGCATTAGTATGAGTTCGTTGACCGCGTAAGGGCGA
TCCATCTTGATGACGAATTCCACGATAACGAGAAATAGAAATTAATCGTTTGATGTCTGCTCGTTCTCCCCTCTTCAATTCCCAATTCACAACATGATCT
TGACTTATCATTTGTTCCATTTGGTCGATCTGATACTTAGTTAACTCCTGAATCTTGATGTTCCCACTGATACCTAATCGATAACGAAACTTCATGGCTT
TTTGAGGTCCAATTCCATCCATTTTGGTTGAGGCTATTCTGACTTGTTCATCGGGAACTGATATAGCTCCATTATTATCTGACATTATTAATCCTTATAC
CTTTTCCTGGTCTTCTCGGCTGGAATCTACAAGGGGTCTCCATCCCTCCACTCACGAACAAAGCTAGCCATTTCTCTTGACTAGAGAAAGATCATAGCAG
AGATTACCCATACCCGAAAGAGCATAGCAGAGATTACCCATACATACCCTATAAGTAAGAGACTATATTATTACCCATACATACCCTATAAGTAAGAGAC
TATATGCGCTTTCAAGTACTCCAACATAGAGAGAGCTATTTCTTTGATTCTTCTATTGATCTCAGAAAAGATTGGAAAGTGTCCCTATACTTATGTATAG
GCGAGAAGGAGCCCAGCCCGCCTTTCTCTTACTATATCTGTGAAAAGAGAATAGGTAGTTTCAGAAAGAATCATTTCAATCAAATTGATAGTCAGAGGAA
TATTCGAAAATCCTGAGGGGAAGAACGTAGATTCATTCCATTCTCTCACACACTATCGCTATTCTCCTCTCCATTCTCTCACTCACTATCGCTATTCTCC
TATAAGAAAGACACTGTTGCAGCAATCGGTTGAAGCATTAGTTCCCGGTTAGTGGGTGCTGGGGACAGACTTGACGTAACAACTCCATGGGGGCCGCCAT
GCCTTTAGATCGATACACTGTTTAGGAGGCCAGGCCGATCACGAACGCTACTGGTGTGGGCTGCTATCAGAGATGATTCAAGAAAGCCAACAAGAATAGG
GCCAAGC