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Detailed information on CNT30592527

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000950, E-value = 6e-79

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696470	Musa acuminata	Oryza sativa	45.21	21.6	93.38	151	reverse complement
CNT30550200	Musa acuminata	Ipomoea triloba	56.59	36.14	98.41	189	forward
CNT30730480	Musa acuminata	Corchorus capsularis	56.59	15.1	98.41	189	reverse complement
CNT30712870	Musa acuminata	Glycine max	56.59	11.37	98.41	189	forward
CNT30157615	Musa acuminata	Pistacia vera	56.59	25.75	96.83	189	forward
CNT30181978	Musa acuminata	Secale cereale	56.59	21.38	98.41	189	reverse complement
CNT30289023	Musa acuminata	Triticum aestivum	56.59	9.58	98.41	189	forward
CNT30221603	Musa acuminata	Hordeum vulgare	56.59	15.68	97.88	189	forward
CNT30543279	Musa acuminata	Brassica napus	56.59	17.8	98.41	189	forward
CNT30234026	Musa acuminata	Brassica oleracea	34.73	29.22	93.97	116	reverse complement
CNT30511493	Musa acuminata	Solanum lycopersicum	34.13	12.75	98.25	114	reverse complement
CNT30147386	Musa acuminata	Medicago truncatula	56.59	12.26	98.41	189	forward
CNT30435868	Musa acuminata	Aegilops tauschii	56.59	13.56	98.41	189	forward
CNT30242955	Musa acuminata	Avena sativa	49.1	17.58	98.17	164	forward
CNT3082633	Musa acuminata	Brassica juncea	37.13	37.69	98.39	124	forward
CNT30605266	Musa acuminata	Gossypium raimondii	56.59	9.03	98.41	189	forward
CNT30207637	Musa acuminata	Helianthus annuus	56.59	9.66	97.35	189	forward
CNT30689133	Musa acuminata	Triticum urartu	56.59	17.85	98.41	189	forward
CNT30720356	Musa acuminata	Triticum spelta	56.59	48.46	98.41	189	reverse complement
CNT30363124	Musa acuminata	Sorghum bicolor	29.04	42.73	90.72	97	forward
CNT30595572	Musa acuminata	Oryza meridionalis	53.29	20.77	95.51	178	forward
CNT30360996	Musa acuminata	Lactuca sativa	56.59	12.95	98.41	189	forward
CNT30434643	Musa acuminata	Papaver somniferum	56.59	25.4	97.35	189	forward
CNT3057903	Musa acuminata	Amborella trichopoda	56.59	7.89	96.83	189	reverse complement
CNT30108930	Musa acuminata	Oryza longistaminata	56.59	8.08	98.41	189	forward
CNT30118490	Musa acuminata	Citrus clementina	25.45	19.19	92.94	85	forward
CNT3038420	Musa acuminata	Cucumis melo	56.59	13.24	98.41	189	forward
CNT30577866	Musa acuminata	Oryza barthii	37.13	7.61	97.58	124	reverse complement
CNT30550626	Musa acuminata	Oryza brachyantha	18.26	20.82	96.72	61	reverse complement

Expression of CNT30592527

Peptides detected in this lncRNA

>peptide 1 (45 aa)
QVEESSHRPWRTEPTYVAKYGDDLWLGVKGQPRSDIAGFPRNLFQ*

>peptide 2 (62 aa)
MKSMARGRALNGLGWAWKQPSFEESVIAHWSSSIAPKMSQGSSDSPKRRDLAKSSLSSVSSGT

Sequence

>CNT30592527
GCAGGTTGAAGAGAGCTCACACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGA
TCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGAAGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGGCTTGGAAGCA
GCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATAGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGCA
AAAAGCAGCCTTTCAAGTGTCAGTAGCGGGACGT