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Detailed information on CNT30592110


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41238|LOX16_SOLTU, E-value = 2e-123

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30246978Musa acuminataAvena sativa11.9724.1186.11108forward
CNT30361620Musa acuminataSorghum bicolor15.9628.9283.33144forward

Expression of CNT30592110

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSRSHAISEVRPRHKGNPRSVGRACRLGPSPQLL

>peptide 2 (29 aa)
CNSMDLIDEEIELKIIVQNSSINLFKCSL*

>peptide 3 (97 aa)
MISASIALSRFPKRSNAFTALSSDVHSGVSRCPRYTSSDAWFDRISMVLRPSMVSSWLVMVFRNTLSGFFFSSSYSGVPGSGMKRRLMVGRFGRYPA*

>peptide 4 (60 aa)
MAAWSAEPIQIMVVHASISSDVVSMAGHQGSSFLSPWPTSRTSFHQACSSASAFTTSFVG*

Sequence

>CNT30592110
TCTGTAATAGCATGGATTTAATTGATGAAGAAATCGAATTAAAGATTATTGTTCAGAATTCCTCAATAAATTTATTCAAATGCAGTCTCTAAGACAACGC
ATCAGCTTTATTCGGTACAATCTTCATGGCTACTCCAGACTTCGACAGGCGACTTAGATGGAGATACTGTTGGGGATTCCCTTGCCGGTGATCCCAACCC
CACTGCTCGGGAAGAGCAAGGTGTAAGGCATCTTCACCGGGCCATTGCGGTTCTTCAAGCGCGGGTCCTCGTTCTTCTTCATGATCTCCGCCTCGATCGC
CTTGAGTCGCTTCCCGAAGCGCTCGAACGCCTTCACCGCCCTGTCATCCGACGTCCATTCCGGCGTGTCCCGTTGTCCCAGGTACACCTCGTCGGACGCG
TGGTTCGACAGGATCTCGATGGTGTTGAGACCCAGCATGGTGAGCAGCTGGCTGGTGATGGTCTTCAGGAACACCTTGTCCGGGTTCTTCTTCAGCTCCT
CGTACTCCGGCGTGCCCGGCTCCGGCATGAAGCGCCGGCTCATGGTCGGCCGGTTTGGCAGGTACCCGGCGTAGGGATACTGCCCGAAGTTGATGGCGGC
GTGGAGCGCAGAACCGATCCAGATTATGGTGGTGCATGCCTCGATTAGCTCGGATGTTGTGAGCATGGCTGGCCACCAGGGCTCGTCCTTTTTGTCGCCA
TGGCCGACCTCGCGGACCTCCTTCCACCAGGCCTGTAGCTCGGCGTCAGCTTTCACGACGTCGTTCGTCGGGTAGTAGATTGCACAGTACTCTCCGACCC
ATGTCTCGATCGCATGCCATATCTGAAGTCCGTCCACGGCATAAGGGTAATCCTCGATCAGTAGGCAGAGCTTGTCGTCTCGGTCCTTCACCGCAACTCC
TC