Detailed information on CNT30592095


BLAST search results

BLAST vs Swiss-Prot:
sp|P55308|CATA2_HORVU, E-value = 6e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692523Musa acuminataOryza sativa58.9814.7282.76174forward
CNT30678563Musa acuminataSetaria viridis33.2246.6782.6598forward
CNT30520085Musa acuminataSetaria italica74.2412.6882.65219forward
CNT30640148Musa acuminataNymphaea colorata43.395.884.38128forward
CNT30616919Musa acuminataSesamum indicum48.1443.9685.21142forward
CNT30185318Musa acuminataSecale cereale48.8110.5286.11144forward
CNT30304171Musa acuminataTriticum aestivum48.8120.0886.81144forward
CNT30223144Musa acuminataHordeum vulgare18.9826.4289.2956forward
CNT30563752Musa acuminataActinidia chinensis20.3412.3286.6760forward
CNT30552704Musa acuminataOryza glaberrima22.3722.7689.3966forward
CNT30243876Musa acuminataAvena sativa47.4618.5982.86140forward
CNT30663726Musa acuminataTriticum dicoccoides74.2426.4882.65219forward
CNT301996Musa acuminataZea mays24.0716.2894.3771forward
CNT30228927Musa acuminataAnanas comosus44.7555.790.91132forward
CNT30347748Musa acuminataEragrostis tef28.1411.9195.1883forward
CNT30369978Musa acuminataOryza glumipatula67.826.6385200forward
CNT30575497Musa acuminataOryza barthii67.815.9585.5200forward
CNT30116279Musa acuminataOryza nivara67.4610.0383.42199forward

Expression of CNT30592095

Peptides detected in this lncRNA

>peptide 1 (96 aa)
LLVLREEVVDVAVQDQPSHRLQRQKVFGPCLGVIERVEVVAVLGIRIHDLNEELPLRVVSGGNGVVQILGGVDHVRELDAVADEEHGEVVPQQIPVA

>peptide 2 (40 aa)
SCSFSEKKLSMLRFKTSLPTGCSGRRSSGHVLVSSSGSKS*

>peptide 3 (48 aa)
AARSPRRSCRCCGSRPAFPPAAAAEGLRAMSWCHRAGRSRSGPRYPDP*

>peptide 4 (34 aa)
MESYRSWVAWITSGNLMPSRMKNTGKLFPSRSQLP

Sequence

>CNT30592095
AGCTGCTCGTTCTCCGAGAAGAAGTTGTCGATGTTGCGGTTCAAGACCAGCCTTCCCACCGGCTGCAGCGGCAGAAGGTCTTCGGGCCATGTCTTGGTGT
CATCGAGCGGGTCGAAGTCGTAGCGGTCCTCGGTATCCGGATCCATGACTTGAACGAAGAGCTTCCACTCCGGGTAGTTTCCGGCGGCAATGGAGTCGTA
CAGATCCTGGGTGGCGTGGATCACGTCCGGGAACTTGATGCCGTCGCGGATGAAGAACACGGGGAAGTTGTTCCCCAGCAGATCCCAGTTGCCCT