Detailed information on CNT30592011


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 9e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628927Musa acuminataVigna unguiculata93.8367.8680380forward
CNT30385584Musa acuminataTriticum turgidum31.8526.7682.95129forward
CNT30554580Musa acuminataOryza glaberrima44.226.3284.36179forward
CNT3076593Musa acuminataBrassica juncea50.3737.3683.33204forward
CNT30263540Musa acuminataBrassica rapa50.3731.6381.86204forward
CNT3067990Musa acuminataLeersia perrieri60.4964.381.22245forward
CNT30625502Musa acuminataDaucus carota55.0627.482.51223forward
CNT30350932Musa acuminataEragrostis tef61.2355.4880.24248forward
CNT30596736Musa acuminataOryza meridionalis50.8627.2882.52206forward
CNT30370935Musa acuminataOryza glumipatula60.4925.3183.27245forward
CNT30154708Musa acuminataPrunus persica66.6782.0780.74270forward
CNT30705859Musa acuminataPrunus avium87.1647.2680.74353forward
CNT30149777Musa acuminataBrachypodium distachyon46.6720.5282.01189forward

Expression of CNT30592011

Peptides detected in this lncRNA

>peptide 1 (45 aa)
CNLEMIDRMDWMVTALDCLENKQAKDCTLLRQDCNLEMWGYNLGM*

>peptide 2 (46 aa)
MMVKSGYMKVMSDYRKVMLDYRMVRLGCRQEMLDCRLGKSDCKLEK*

Sequence

>CNT30592011
TGTAATTTGGAGATGATTGACCGTATGGACTGGATGGTGACAGCCTTGGACTGCTTGGAGAATAAGCAAGCGAAGGACTGTACTTTGCTGAGGCAGGATT
GTAACTTGGAGATGTGGGGCTATAACTTGGGGATGTAGGACTATAGCTAGGAGATGTAGGACTGTATGATGGTGAAGTCGGGCTATATGAAGGTGATGTC
GGACTATAGGAAGGTGATGTTGGACTATAGGATGGTGAGGTTGGGCTGTAGGCAGGAGATGTTGGACTGTAGGCTGGGGAAGTCGGACTGTAAACTGGAG
AAGTAGGGCTGTAGCTTGGCGAAGTAGGACTGTAACTGGGGGAAGTTGGGCTGTAACTGGGGGAAGTAGGACTATAAGTAGGAGATGTAGGGCTATAACT
GGGAG