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Detailed information on CNT30591965


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39950|NLTP_HELAN, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677036Musa acuminataSetaria viridis5.5623.4590.5753forward
CNT30473478Musa acuminataSaccharum spontaneum5.5625.1292.4553forward

Expression of CNT30591965

Peptides detected in this lncRNA

>peptide 1 (90 aa)
MPATVPDWMPLRPATVDLRQLQAVWRSGVVLAASLRLLTPLQHDLVSASVARGAAATRTTASASTTRAPERAITKCKHQDRYTYEEDWMNC

>peptide 2 (50 aa)
TLNKKNMCKIRVRRTWKKNMEEDRDLKCDCYMRVKRWRNLSERHCQSQII*

>peptide 3 (50 aa)
MTVKGVQASMTKNSFLLYFMGFALRKSYLFLSLFYLRLEIFASLIFYHSF*

Sequence

>CNT30591965
CACCCTGAACAAGAAGAACATGTGTAAGATAAGAGTAAGAAGAACATGGAAGAAGAACATGGAAGAAGACAGAGATCTTAAGTGTGATTGCTATATGAGA
GTCAAACGATGGAGAAACTTAAGTGAAAGACACTGCCAGAGTCAAATCATTTAAAGAGGGGGCTTTCTCTTTCTAGATATTATGCTGTTCTCCTGACTAA
TTCTAAGGGAAGAGCAAAATACTGAAAGATGAGTATTATTTGGTCAAAATATTCTACTCACATCTTCTGTAGAAGAAGATGACTGTCAAGGGAGTTCAAG
CTAGTATGACTAAAAACTCTTTTCTCTTGTATTTTATGGGTTTTGCTCTTCGGAAGTCATACTTGTTTCTCTCATTATTCTACTTGAGATTAGAAATCTT
TGCAAGTTTAATCTTTTACCACTCATTTTAAGTTGATTATGAGCAATCTTTTGACTATATATGTGTAGTTGCATGTAGTATATAATGCCAAACAGCTAGT
GAGGTATGAAAAGCAGCAAGAATTTGATTTGATCCTCCTGCATCAGACACCAAGTTTAGCCGTGAAACAAAGACAGAAGGTGAGGAGGAAGCCAAAGCAG
CACTAGCGCAGAGACTCACTTGGAGCAGTCGACGGAGGTGCTGATGGGGTAGGGGACGCTGACGCCGCACTTGCCCGGGATGCCGGCAACAGTACCGGAC
TGGATGCCCTTGAGACCGGCAACCGTGGACTTGAGGCAGCTGCAAGCGGTCTGGCGGTCCGGCGTGGTCTTGGCGGCGTCGTTGAGACTCCTCACCCCGC
TGCAGCACGACTTGGTGAGCGCCTCCGTGGCACGCGGCGCCGCCGCGACGAGGACGACGGCCAGCGCGAGCACCACAAGAGCACCGGAGCGCGCCATTAC
CAAATGCAAACACCAAGACAGATACACTTACGAGGAAGATTGGATGAACTGCTG